Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014222A_C01 KMC014222A_c01
(534 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB65461.1| deoxyhypusine synthase [Senecio vernalis] 184 8e-46
gb|AAK32840.1|AF361828_1 AT5g05920/K18J17_7 [Arabidopsis thalian... 182 2e-45
ref|NP_196211.1| deoxyhypusine synthase; protein id: At5g05920.1... 182 2e-45
gb|AAG53644.1|AF296080_1 deoxyhypusine synthase [Dianthus caryop... 181 6e-45
gb|AAG53642.2|AF296078_1 deoxyhypusine synthase [Arabidopsis tha... 180 8e-45
>emb|CAB65461.1| deoxyhypusine synthase [Senecio vernalis]
Length = 371
Score = 184 bits (466), Expect = 8e-46
Identities = 87/94 (92%), Positives = 92/94 (97%)
Frame = -3
Query: 532 NGEAVHANPRKTGMSILGGGLPEHHICNADMMRNGADYAVFINTAQEFDGSDSGARPDEA 353
N EAVHANPRKTGM ILGGGLP+HHICNA+MMRNGADYAVFINTAQEFDGSDSGARPDEA
Sbjct: 269 NSEAVHANPRKTGMIILGGGLPKHHICNANMMRNGADYAVFINTAQEFDGSDSGARPDEA 328
Query: 352 VSWGKIRGSAKTVKVHCDATIAFPLLVAETFASR 251
VSWGKIRGSAK+VKVHCDATIAFPLLVAETFA++
Sbjct: 329 VSWGKIRGSAKSVKVHCDATIAFPLLVAETFAAK 362
>gb|AAK32840.1|AF361828_1 AT5g05920/K18J17_7 [Arabidopsis thaliana]
gi|15810081|gb|AAL06966.1| AT5g05920/K18J17_7
[Arabidopsis thaliana]
Length = 246
Score = 182 bits (463), Expect = 2e-45
Identities = 86/94 (91%), Positives = 92/94 (97%)
Frame = -3
Query: 532 NGEAVHANPRKTGMSILGGGLPEHHICNADMMRNGADYAVFINTAQEFDGSDSGARPDEA 353
NGEAVHANP+KTGM ILGGGLP+HHICNA+MMRNGADYAVFINT QEFDGSDSGARPDEA
Sbjct: 144 NGEAVHANPKKTGMIILGGGLPKHHICNANMMRNGADYAVFINTGQEFDGSDSGARPDEA 203
Query: 352 VSWGKIRGSAKTVKVHCDATIAFPLLVAETFASR 251
VSWGKIRGSAKTVKV+CDATIAFPLLVAETFA++
Sbjct: 204 VSWGKIRGSAKTVKVYCDATIAFPLLVAETFATK 237
>ref|NP_196211.1| deoxyhypusine synthase; protein id: At5g05920.1, supported by cDNA:
38743., supported by cDNA: gi_15431344 [Arabidopsis
thaliana] gi|10177565|dbj|BAB10797.1| deoxyhypusine
synthase [Arabidopsis thaliana]
gi|21593415|gb|AAM65382.1| deoxyhypusine synthase
[Arabidopsis thaliana]
Length = 368
Score = 182 bits (463), Expect = 2e-45
Identities = 86/94 (91%), Positives = 92/94 (97%)
Frame = -3
Query: 532 NGEAVHANPRKTGMSILGGGLPEHHICNADMMRNGADYAVFINTAQEFDGSDSGARPDEA 353
NGEAVHANP+KTGM ILGGGLP+HHICNA+MMRNGADYAVFINT QEFDGSDSGARPDEA
Sbjct: 266 NGEAVHANPKKTGMIILGGGLPKHHICNANMMRNGADYAVFINTGQEFDGSDSGARPDEA 325
Query: 352 VSWGKIRGSAKTVKVHCDATIAFPLLVAETFASR 251
VSWGKIRGSAKTVKV+CDATIAFPLLVAETFA++
Sbjct: 326 VSWGKIRGSAKTVKVYCDATIAFPLLVAETFATK 359
>gb|AAG53644.1|AF296080_1 deoxyhypusine synthase [Dianthus caryophyllus]
Length = 373
Score = 181 bits (458), Expect = 6e-45
Identities = 85/94 (90%), Positives = 91/94 (96%)
Frame = -3
Query: 532 NGEAVHANPRKTGMSILGGGLPEHHICNADMMRNGADYAVFINTAQEFDGSDSGARPDEA 353
NGEAVHA PRKTGM ILGGGLP+HHICNA+MMRNGADYAVFINTA+EFDGSDSGARPDEA
Sbjct: 272 NGEAVHAAPRKTGMIILGGGLPKHHICNANMMRNGADYAVFINTAEEFDGSDSGARPDEA 331
Query: 352 VSWGKIRGSAKTVKVHCDATIAFPLLVAETFASR 251
+SWGKI GSAKTVKVHCDATIAFPLLVAETFA++
Sbjct: 332 ISWGKISGSAKTVKVHCDATIAFPLLVAETFAAK 365
>gb|AAG53642.2|AF296078_1 deoxyhypusine synthase [Arabidopsis thaliana]
Length = 368
Score = 180 bits (457), Expect = 8e-45
Identities = 85/94 (90%), Positives = 91/94 (96%)
Frame = -3
Query: 532 NGEAVHANPRKTGMSILGGGLPEHHICNADMMRNGADYAVFINTAQEFDGSDSGARPDEA 353
NGEAVHANP+KTGM ILGGGLP+HHICNA+MMRNGADYAVFIN QEFDGSDSGARPDEA
Sbjct: 266 NGEAVHANPKKTGMIILGGGLPKHHICNANMMRNGADYAVFINPGQEFDGSDSGARPDEA 325
Query: 352 VSWGKIRGSAKTVKVHCDATIAFPLLVAETFASR 251
VSWGKIRGSAKTVKV+CDATIAFPLLVAETFA++
Sbjct: 326 VSWGKIRGSAKTVKVYCDATIAFPLLVAETFATK 359
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 429,654,980
Number of Sequences: 1393205
Number of extensions: 8673148
Number of successful extensions: 25744
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 25244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25718
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
