Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014212A_C01 KMC014212A_c01
(633 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201499.1| putative protein; protein id: At5g66980.1 [Arab... 32 1.1
ref|NP_386198.1| CONSERVED HYPOTHETICAL TRANSMEMBRANE PROTEIN [S... 34 1.8
ref|ZP_00074532.1| hypothetical protein [Trichodesmium erythraeu... 32 5.3
ref|NP_688710.1| conserved hypothetical protein [Streptococcus a... 32 7.0
ref|NP_568146.1| Expressed protein; protein id: At5g04930.1, sup... 32 9.1
>ref|NP_201499.1| putative protein; protein id: At5g66980.1 [Arabidopsis thaliana]
gi|9758543|dbj|BAB08937.1|
gb|AAF30309.1~gene_id:K8A10.5~similar to unknown protein
[Arabidopsis thaliana]
Length = 334
Score = 32.0 bits (71), Expect(2) = 1.1
Identities = 20/62 (32%), Positives = 31/62 (49%)
Frame = -3
Query: 397 SEVLSLSNRFLPEYFHPDEVYIVVPRQFLNDFEESLSKYVELVDPVGNKFCVSFYFDRDE 218
S+ L FLPE+ + +V+P F++ E+ L K LVD +G +CV + E
Sbjct: 5 SKDLQFFKVFLPEFGSHE---LVIPPAFIDMLEKPLPKEAFLVDEIGRLWCVETKTEDTE 61
Query: 217 PR 212
R
Sbjct: 62 ER 63
Score = 21.6 bits (44), Expect(2) = 1.1
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -1
Query: 198 FQSYELCTQIQGSVIICFIYLGDSRFDIPI 109
+QS+ ++ + F Y GDSRF + I
Sbjct: 72 WQSFANDQSLEFGDFLVFSYDGDSRFSVTI 101
>ref|NP_386198.1| CONSERVED HYPOTHETICAL TRANSMEMBRANE PROTEIN [Sinorhizobium
meliloti] gi|15075114|emb|CAC46671.1| CONSERVED
HYPOTHETICAL TRANSMEMBRANE PROTEIN [Sinorhizobium
meliloti]
Length = 394
Score = 33.9 bits (76), Expect = 1.8
Identities = 20/56 (35%), Positives = 30/56 (52%)
Frame = -3
Query: 370 FLPEYFHPDEVYIVVPRQFLNDFEESLSKYVELVDPVGNKFCVSFYFDRDEPRSGA 203
F+P Y PD V++ +PR + + + YV VDP+ +K + FDR P GA
Sbjct: 28 FIPGYEKPDRVWLPIPRDEIGEGPSDATMYV--VDPLDDK--EPYGFDRLPPFHGA 79
>ref|ZP_00074532.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 601
Score = 32.3 bits (72), Expect = 5.3
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -3
Query: 409 ISTPSEVLSLSNRFLPEYFHPDEVYIVVP-RQFLNDFEESLSKYVELVDP 263
I T S+ ++ R E+ D VYIV RQ L + + SL KY E ++P
Sbjct: 50 IRTISDEYQVAPRLNSEFSISDNVYIVKGNRQLLKNLKSSLGKYTEYIEP 99
>ref|NP_688710.1| conserved hypothetical protein [Streptococcus agalactiae 2603V/R]
gi|25011804|ref|NP_736199.1| Unknown [Streptococcus
agalactiae NEM316] gi|22534755|gb|AAN00583.1|AE014270_1
conserved hypothetical protein [Streptococcus agalactiae
2603V/R] gi|24413345|emb|CAD47424.1| Unknown
[Streptococcus agalactiae NEM316]
Length = 180
Score = 32.0 bits (71), Expect = 7.0
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Frame = -3
Query: 547 FNISHLIY----------LSFEIGFISYVIVNI*PLLHFSILHLEVVIGFFV*LLCISTP 398
F +SH+ Y LS+ +G + V++++ P+ HF L ++ GF L+C+
Sbjct: 74 FQLSHVYYAGVAFVFIYSLSYLVGRLLGVLLHLAPVEHFDSLQNNIISGFLAVLVCLLFM 133
Query: 397 SEVLSL 380
S L++
Sbjct: 134 SMCLTI 139
>ref|NP_568146.1| Expressed protein; protein id: At5g04930.1, supported by cDNA:
gi_9909197 [Arabidopsis thaliana]
gi|12229646|sp|P98204|ALA1_ARATH
Phospholipid-transporting ATPase 1 (Aminophospholipid
flippase 1) gi|9909198|gb|AAG01899.1|AF175769_1
aminophospholipid flippase [Arabidopsis thaliana]
gi|10178032|dbj|BAB11515.1| ATPase [Arabidopsis thaliana]
Length = 1158
Score = 31.6 bits (70), Expect = 9.1
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Frame = -3
Query: 529 IYLSFEIGFISYVIVNI*PLL--HFSILHLEVVIGFFV*LLCISTPSEVLSLSNRFLPEY 356
I+ S I +++++ P L +++I + F+ LL I S + + +FL EY
Sbjct: 1062 IWGSIVAACICVIVIDVIPTLPGYWAIFQVGKTWMFWFCLLAIVVTSLLPRFAIKFLVEY 1121
Query: 355 FHPDEVYIVVPRQFLNDFEESLSKYVEL 272
+ P +V I + L F ES VE+
Sbjct: 1122 YRPSDVRIAREAEKLGTFRESQPVGVEM 1149
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 485,029,899
Number of Sequences: 1393205
Number of extensions: 9780431
Number of successful extensions: 20057
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 19588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20056
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26154777244
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
