Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014203A_C01 KMC014203A_c01
(650 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200276.1| putative protein; protein id: At5g54650.1, supp... 35 0.67
gb|AAK68741.1| Unknown protein [Arabidopsis thaliana] gi|2213649... 35 0.67
ref|NP_608967.1| CG9021-PA [Drosophila melanogaster] gi|7297029|... 34 1.5
ref|NP_611735.1| CG3695-PA [Drosophila melanogaster] gi|7291500|... 34 2.0
ref|NP_046743.1| Rep-like [Dictyostelium discoideum] gi|7489904|... 34 2.0
>ref|NP_200276.1| putative protein; protein id: At5g54650.1, supported by cDNA:
gi_14596026 [Arabidopsis thaliana]
gi|9758957|dbj|BAB09344.1| contains similarity to
unknown protein~gb|AAF64546.1~gene_id:MRB17.15
[Arabidopsis thaliana]
Length = 900
Score = 35.4 bits (80), Expect = 0.67
Identities = 26/93 (27%), Positives = 47/93 (49%), Gaps = 8/93 (8%)
Frame = -1
Query: 323 GMGIQKYMVAIRFSFCVLLVLLLVAAVSFVEKKESQDEFVSELLDSTSGLLDEH--KVLW 150
GMG Q + R F ++L L+ ++ E E + F+S+ + ++G ++EH + W
Sbjct: 8 GMGDQNWS---RLVFWLILFSGLLV-ITLEENPEKDEIFLSQFMAPSTGQVNEHMEETSW 63
Query: 149 IS-CWEDLIHLKKEFQDHDLCLP-----QEXFG 69
CW+D +K+ + +LC P +E FG
Sbjct: 64 AQRCWQDSDCVKEAVAEFNLCFPGSKDSRELFG 96
>gb|AAK68741.1| Unknown protein [Arabidopsis thaliana] gi|22136490|gb|AAM91323.1|
unknown protein [Arabidopsis thaliana]
Length = 900
Score = 35.4 bits (80), Expect = 0.67
Identities = 26/93 (27%), Positives = 47/93 (49%), Gaps = 8/93 (8%)
Frame = -1
Query: 323 GMGIQKYMVAIRFSFCVLLVLLLVAAVSFVEKKESQDEFVSELLDSTSGLLDEH--KVLW 150
GMG Q + R F ++L L+ ++ E E + F+S+ + ++G ++EH + W
Sbjct: 8 GMGDQNWS---RLVFWLILFSGLLV-ITLEENPEKDEIFLSQFMAPSTGQVNEHMEETSW 63
Query: 149 IS-CWEDLIHLKKEFQDHDLCLP-----QEXFG 69
CW+D +K+ + +LC P +E FG
Sbjct: 64 AQRCWQDSDCVKEAVAEFNLCFPGSKDSRELFG 96
>ref|NP_608967.1| CG9021-PA [Drosophila melanogaster] gi|7297029|gb|AAF52299.1|
CG9021-PA [Drosophila melanogaster]
gi|17862806|gb|AAL39880.1| LP05310p [Drosophila
melanogaster]
Length = 316
Score = 34.3 bits (77), Expect = 1.5
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 16/79 (20%)
Frame = -1
Query: 305 YMVAIRFSFCVLLVLLLVAAVSFVEKKESQDEFVSELLDS-------TSGLLDE------ 165
+ + + FSFC LLLVA S VE +E D + ++D G++ E
Sbjct: 2 HRLVVIFSFC----LLLVAGQSVVEPQELSDSTTTYIVDGFPDESQELPGIVAETDEEIE 57
Query: 164 ---HKVLWISCWEDLIHLK 117
HK+ W+ WE+ H++
Sbjct: 58 MNAHKINWLPVWEEQEHVR 76
>ref|NP_611735.1| CG3695-PA [Drosophila melanogaster] gi|7291500|gb|AAF46925.1|
CG3695-PA [Drosophila melanogaster]
Length = 1439
Score = 33.9 bits (76), Expect = 2.0
Identities = 21/102 (20%), Positives = 46/102 (44%)
Frame = +1
Query: 337 SSHFIKGLYPQNKITFHYPTPTHFNSSAEERVTQNFQDQAQSTKAKPKILFRHHSSKL*L 516
S IK L P ++ + T + E++ N + A +++ + + +H
Sbjct: 1306 SEAIIKRLRPLLQMRLRFITHLNLEDIHTEKINDNTSNNAITSQTQSPMQTQH------- 1358
Query: 517 NQIKPSKTHQEYQSKK*EEDVKQSKSQTSHEKQPKQ*KQIQT 642
Q +P + HQ+ Q ++ ++ +Q + Q + Q +Q +QT
Sbjct: 1359 -QQQPQQPHQQQQQQQQQQQQQQQQQQQQQQMQQQQINAVQT 1399
>ref|NP_046743.1| Rep-like [Dictyostelium discoideum] gi|7489904|pir||T02634 rep
protein homolog - slime mold (Dictyostelium discoideum)
plasmid Ddp5 gi|3068583|gb|AAC14390.1| Rep-like
[Dictyostelium discoideum]
Length = 1038
Score = 33.9 bits (76), Expect = 2.0
Identities = 41/178 (23%), Positives = 81/178 (45%), Gaps = 9/178 (5%)
Frame = +1
Query: 127 IKSSQQLIHSTL-CSSNNPDVESSSSLTNSSC-DSFFSTKLTAATRRRTKRTQKLNL--- 291
IKS+ +LI + S N D+ SS + SC D FST + + R + K+ L
Sbjct: 819 IKSNNKLIKTIEPISVENVDINHSSFNFSISCYDIIFSTIIISKARLDELKNYKIALPKN 878
Query: 292 MATIY--F*IPIPSA*LSSHFIKGLYPQNK--ITFHYPTPTHFNSSAEERVTQNFQDQAQ 459
++T+ F + + + +K L K I+ + T + N A+ER Q Q+Q +
Sbjct: 879 LSTVQDQFVKIVTNFASKINELKDLTDLEKHIISQYLLTQENKNKKAQERERQKIQEQQE 938
Query: 460 STKAKPKILFRHHSSKL*LNQIKPSKTHQEYQSKK*EEDVKQSKSQTSHEKQPKQ*KQ 633
+ + + R + + + + QE Q ++ +++ ++ + Q +Q +Q +Q
Sbjct: 939 QQEQQEQRERREQQEQQEQQEQQEQQEQQEQQEQQEQQEQQEQQEQQEQREQEEQEEQ 996
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 549,045,263
Number of Sequences: 1393205
Number of extensions: 11914581
Number of successful extensions: 38281
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 30805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36668
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27860523586
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
