Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014192A_C01 KMC014192A_c01
(500 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9M0Y8|NSF_ARATH Vesicle-fusing ATPase (Vesicular-fusion prot... 94 7e-19
ref|NP_192400.1| putative component of vesicle-mediated transpor... 94 7e-19
pir||T02996 N-ethylmaleimide sensitive fusion protein NSF - comm... 91 7e-18
gb|AAD17345.1| similar to N-ethylmaleimide sensitive fusion prot... 84 1e-15
pir||T05848 hypothetical protein F17L22.190 - Arabidopsis thalia... 41 0.009
>sp|Q9M0Y8|NSF_ARATH Vesicle-fusing ATPase (Vesicular-fusion protein NSF)
(N-ethylmaleimide sensitive fusion protein)
gi|20856713|gb|AAM26681.1| AT4g04910/T1J1_4 [Arabidopsis
thaliana]
Length = 742
Score = 94.4 bits (233), Expect = 7e-19
Identities = 43/60 (71%), Positives = 56/60 (92%)
Frame = -3
Query: 498 KVLHELNVFAEEDIDSAAEALNDIPIRKLYMLVEMAAQGSEGGSAEAIFSGKEKINIISF 319
KVL++LN+F+E+D+DSAAEALND+PI+K+YML+EMAAQG GGSAEAI++G+EKINI F
Sbjct: 671 KVLNQLNLFSEDDVDSAAEALNDMPIKKIYMLIEMAAQGENGGSAEAIYAGREKININHF 730
>ref|NP_192400.1| putative component of vesicle-mediated transport; protein id:
At4g04910.1 [Arabidopsis thaliana]
gi|25289964|pir||G85061 hypothetical protein AT4g04910
[imported] - Arabidopsis thaliana
gi|7267250|emb|CAB81033.1| putative component of
vesicle-mediated transport [Arabidopsis thaliana]
Length = 744
Score = 94.4 bits (233), Expect = 7e-19
Identities = 43/60 (71%), Positives = 56/60 (92%)
Frame = -3
Query: 498 KVLHELNVFAEEDIDSAAEALNDIPIRKLYMLVEMAAQGSEGGSAEAIFSGKEKINIISF 319
KVL++LN+F+E+D+DSAAEALND+PI+K+YML+EMAAQG GGSAEAI++G+EKINI F
Sbjct: 673 KVLNQLNLFSEDDVDSAAEALNDMPIKKIYMLIEMAAQGENGGSAEAIYAGREKININHF 732
>pir||T02996 N-ethylmaleimide sensitive fusion protein NSF - common tobacco
gi|1449179|dbj|BAA13101.1| N-ethylmaleimide sensitive
fusion protein [Nicotiana tabacum]
Length = 739
Score = 90.9 bits (224), Expect = 7e-18
Identities = 43/60 (71%), Positives = 52/60 (86%)
Frame = -3
Query: 498 KVLHELNVFAEEDIDSAAEALNDIPIRKLYMLVEMAAQGSEGGSAEAIFSGKEKINIISF 319
KVL +LNVF+ +D+DSAAEALND+PI+KLYM+VEMAAQG GG+ EAI+SGKEKI I F
Sbjct: 670 KVLQQLNVFSNDDVDSAAEALNDMPIKKLYMVVEMAAQGEHGGTGEAIYSGKEKIQISHF 729
>gb|AAD17345.1| similar to N-ethylmaleimide sensitive fusion proteins; contains
similarity to ATPases (Pfam: PF00004, Score=307.7,
E=1.4e-88n N=1) [Arabidopsis thaliana]
Length = 772
Score = 83.6 bits (205), Expect = 1e-15
Identities = 43/79 (54%), Positives = 56/79 (70%), Gaps = 19/79 (24%)
Frame = -3
Query: 498 KVLHELNVFAEEDIDSAAEALNDI-------------------PIRKLYMLVEMAAQGSE 376
KVL++LN+F+E+D+DSAAEALND+ PI+K+YML+EMAAQG
Sbjct: 682 KVLNQLNLFSEDDVDSAAEALNDVSFRPLRAEIDKNREIVLFMPIKKIYMLIEMAAQGEN 741
Query: 375 GGSAEAIFSGKEKINIISF 319
GGSAEAI++G+EKINI F
Sbjct: 742 GGSAEAIYAGREKININHF 760
>pir||T05848 hypothetical protein F17L22.190 - Arabidopsis thaliana
gi|4455281|emb|CAB36817.1| hypothetical protein
[Arabidopsis thaliana] gi|7268970|emb|CAB81280.1|
hypothetical protein [Arabidopsis thaliana]
Length = 100
Score = 40.8 bits (94), Expect = 0.009
Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Frame = -3
Query: 486 ELNVFA-EEDIDSAAEALNDIPIRKLYMLVEMAAQGSEGGSAEAIFSGKEKINIISFL 316
+L+ FA E D + +IPI++LY+L+EMAAQ +G S E ++ KEK++I F+
Sbjct: 34 DLHRFAVPETADLFLANVGEIPIKQLYLLMEMAAQ-RDGRSEEPVYIRKEKLDITHFM 90
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 367,688,580
Number of Sequences: 1393205
Number of extensions: 6689503
Number of successful extensions: 15139
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 14796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15134
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
