KMC014182A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC014182A_C01 KMC014182A_c01
AAATAAATGACTTTATTAGAATTCAATTTTCCCGAAGGAAGTTAATGCTCATCTACAAAT
ATGTTCACTGACATTCCAGACATTAATTAACCTAAGAATATTGAATTTTTTCCACACTTT
TATTTCTTATACTTTGCATTTCCTTTCCTGCAATAAACTATCTCACCAAACAATTTTGAT
TTTTCACACTTATTTCAACAGTTAAAAAAATGGTAGTGAAGTAACTGATAAAAATCACAG
TATTTGGACCCAAATACCCTCACTTGGAATGCGCCTTCTCTGATGAACCACGAACACTAG
ATAGAAACCAGGTGGTGCAAGTGTAGCTGAACCAGGTGCAGTAACCTCAACTTCATGTAT
TGATTCTCCAACATCTTTCAAACCATTTGGCTCCAGCACCAACAATCTTTGATTCATGGA
GAAAGAGTGTGTGTTAAAAGGCGGCGCCAGCATTGTCATAGACACAGAATCTGGAGCCGC
CAACAACGCTGTCACCTGGAACCGTATCCTCAACCCCTGGCCATACTTGAGTTTGGTTTG
GGCCTGGGGAGTAGGGGACACGATTCTGGGACGCACGTTGGTGTATTGCGGCTCCAAATA
CGGAGGCGAAAACGCCTCCAAACTCAGCTCCGTCGGGAACAACACGCTGCTGAAATTGTA
ATACTCGTGTGGGTTGCTCCCGGCGACGAGAACACGTCCGTCACGTAGCAGAACGGCGGT
ggaatgatacatccatggggttttcgtcgggttttgtaactcgaattgtgaccgacccgg
gtatttgttttgtagatacc


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC014182A_C01 KMC014182A_c01
         (800 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_177692.1| unknown protein; protein id: At1g75620.1 [Arabi...   197  1e-49
pir||D86332 hypothetical protein F6F9.4 [imported] - Arabidopsis...   193  2e-48
ref|NP_173419.1| unknown protein; protein id: At1g19900.1, suppo...   193  2e-48
pir||H86278 F14L17.20 protein - Arabidopsis thaliana gi|7262685|...   166  3e-40
ref|NP_172895.1| hypothetical protein; protein id: At1g14430.1 [...   163  3e-39

>ref|NP_177692.1| unknown protein; protein id: At1g75620.1 [Arabidopsis thaliana]
           gi|9369366|gb|AAF87115.1|AC006434_11 F10A5.18
           [Arabidopsis thaliana]
          Length = 547

 Score =  197 bits (502), Expect = 1e-49
 Identities = 106/181 (58%), Positives = 134/181 (73%), Gaps = 1/181 (0%)
 Frame = -3

Query: 780 PGRSQFELQNPTKTPWMYHSTAVLLRDGRVLVAGSNPHEYYNFSSVLFPTELSLEAFSPP 601
           P  S+FE+QNP+  P MYHS A LLRDGR+LV GSNPH +YNF+ VLFPTEL LEAFSP 
Sbjct: 372 PVGSRFEVQNPSTIPRMYHSIATLLRDGRILVGGSNPHAFYNFTGVLFPTELRLEAFSPS 431

Query: 600 YLEPQYTNVRPRIVSPTPQAQTKLKYGQGLRIRFQVTALLAAPDSVSMTMLAPPFNTHSF 421
           YL+ +Y+++RP IV P P  QT + YG+ LR+RF V+  + +P  V +TML P F THSF
Sbjct: 432 YLDTKYSSLRPSIVDPRP--QTTVNYGRVLRLRFIVSGRVKSP--VKVTMLFPSFTTHSF 487

Query: 420 SMNQRLLVLEPNGLKDVGES-IHEVEVTAPGSATLAPPGFYLVFVVHQRRRIPSEGIWVQ 244
           SM+QRLLVL+      +G S I+EV V  P SA LAPPG+Y+VFVV+Q   IPSEG+WV+
Sbjct: 488 SMHQRLLVLDHVISFKLGISKIYEVRVRTPSSAILAPPGYYMVFVVNQ--DIPSEGLWVR 545

Query: 243 I 241
           +
Sbjct: 546 L 546

>pir||D86332 hypothetical protein F6F9.4 [imported] - Arabidopsis thaliana
           gi|10086483|gb|AAG12543.1|AC007797_3 Unknown Protein
           [Arabidopsis thaliana]
          Length = 504

 Score =  193 bits (491), Expect = 2e-48
 Identities = 99/181 (54%), Positives = 133/181 (72%), Gaps = 1/181 (0%)
 Frame = -3

Query: 780 PGRSQFELQNPTKTPWMYHSTAVLLRDGRVLVAGSNPHEYYNFSSVLFPTELSLEAFSPP 601
           P  S+FE   PT  P MYHS A+LLRDGRVLV GSNPH +YN++ VLFPTELSLEAFSP 
Sbjct: 329 PVGSRFESLRPTTIPRMYHSAAILLRDGRVLVGGSNPHAFYNYTGVLFPTELSLEAFSPV 388

Query: 600 YLEPQYTNVRPRIVSPTPQAQTKLKYGQGLRIRFQVTALLAAPDSVSMTMLAPPFNTHSF 421
           YL+ +++N+RP+I+SP PQ+   +KYG  L+++F VT  +  P  V  TM+ P F THSF
Sbjct: 389 YLQREFSNLRPKIISPEPQSM--IKYGTNLKLKFSVTGEVTTPAKV--TMVFPTFTTHSF 444

Query: 420 SMNQRLLVLEPNGLKDVGES-IHEVEVTAPGSATLAPPGFYLVFVVHQRRRIPSEGIWVQ 244
           +MNQR+LVL+       G+S ++EV+V  P SA +A PG+Y++FVV+Q   IPSEG+WV+
Sbjct: 445 AMNQRVLVLDNVKFTRKGKSPMYEVQVRTPRSANIAWPGYYMIFVVNQ--DIPSEGVWVK 502

Query: 243 I 241
           +
Sbjct: 503 L 503

>ref|NP_173419.1| unknown protein; protein id: At1g19900.1, supported by cDNA:
           gi_16604506 [Arabidopsis thaliana]
           gi|16604507|gb|AAL24259.1| At1g19900/F6F9_4 [Arabidopsis
           thaliana]
          Length = 548

 Score =  193 bits (491), Expect = 2e-48
 Identities = 99/181 (54%), Positives = 133/181 (72%), Gaps = 1/181 (0%)
 Frame = -3

Query: 780 PGRSQFELQNPTKTPWMYHSTAVLLRDGRVLVAGSNPHEYYNFSSVLFPTELSLEAFSPP 601
           P  S+FE   PT  P MYHS A+LLRDGRVLV GSNPH +YN++ VLFPTELSLEAFSP 
Sbjct: 373 PVGSRFESLRPTTIPRMYHSAAILLRDGRVLVGGSNPHAFYNYTGVLFPTELSLEAFSPV 432

Query: 600 YLEPQYTNVRPRIVSPTPQAQTKLKYGQGLRIRFQVTALLAAPDSVSMTMLAPPFNTHSF 421
           YL+ +++N+RP+I+SP PQ+   +KYG  L+++F VT  +  P  V  TM+ P F THSF
Sbjct: 433 YLQREFSNLRPKIISPEPQSM--IKYGTNLKLKFSVTGEVTTPAKV--TMVFPTFTTHSF 488

Query: 420 SMNQRLLVLEPNGLKDVGES-IHEVEVTAPGSATLAPPGFYLVFVVHQRRRIPSEGIWVQ 244
           +MNQR+LVL+       G+S ++EV+V  P SA +A PG+Y++FVV+Q   IPSEG+WV+
Sbjct: 489 AMNQRVLVLDNVKFTRKGKSPMYEVQVRTPRSANIAWPGYYMIFVVNQ--DIPSEGVWVK 546

Query: 243 I 241
           +
Sbjct: 547 L 547

>pir||H86278 F14L17.20 protein - Arabidopsis thaliana
           gi|7262685|gb|AAF43943.1|AC012188_20 Weak similarity to
           glyoxal oxidase (glx2) from Phanerochaete chrysosporium
           gb|L47287. [Arabidopsis thaliana]
          Length = 564

 Score =  166 bits (421), Expect = 3e-40
 Identities = 85/186 (45%), Positives = 119/186 (63%)
 Frame = -3

Query: 798 YLQNKYPGRSQFELQNPTKTPWMYHSTAVLLRDGRVLVAGSNPHEYYNFSSVLFPTELSL 619
           YL  +     +FE+  PT+ P MYHS ++LL DGRVLV GSNPH  YNF++  +PTELSL
Sbjct: 383 YLPEEPDQTRRFEILTPTRIPRMYHSASLLLSDGRVLVGGSNPHRNYNFTARPYPTELSL 442

Query: 618 EAFSPPYLEPQYTNVRPRIVSPTPQAQTKLKYGQGLRIRFQVTALLAAPDSVSMTMLAPP 439
           EA+ P YL+PQY  VRP I+  T +    + YGQ   + F + A       VS+ ++AP 
Sbjct: 443 EAYLPRYLDPQYARVRPTII--TVELAGNMLYGQAFAVTFAIPAFGMFDGGVSVRLVAPS 500

Query: 438 FNTHSFSMNQRLLVLEPNGLKDVGESIHEVEVTAPGSATLAPPGFYLVFVVHQRRRIPSE 259
           F+THS +MNQRLLVL    +  +    ++ +V  P ++ +APPG+Y++FVVH  R IPS 
Sbjct: 501 FSTHSTAMNQRLLVLRVRRVSQLSVFAYKADVDGPTNSYVAPPGYYMMFVVH--RGIPSV 558

Query: 258 GIWVQI 241
            +WV+I
Sbjct: 559 AVWVKI 564

>ref|NP_172895.1| hypothetical protein; protein id: At1g14430.1 [Arabidopsis
           thaliana]
          Length = 849

 Score =  163 bits (412), Expect = 3e-39
 Identities = 83/183 (45%), Positives = 116/183 (63%)
 Frame = -3

Query: 798 YLQNKYPGRSQFELQNPTKTPWMYHSTAVLLRDGRVLVAGSNPHEYYNFSSVLFPTELSL 619
           YL  +     +FE+  PT+ P MYHS ++LL DGRVLV GSNPH  YNF++  +PTELSL
Sbjct: 383 YLPEEPDQTRRFEILTPTRIPRMYHSASLLLSDGRVLVGGSNPHRNYNFTARPYPTELSL 442

Query: 618 EAFSPPYLEPQYTNVRPRIVSPTPQAQTKLKYGQGLRIRFQVTALLAAPDSVSMTMLAPP 439
           EA+ P YL+PQY  VRP I+  T +    + YGQ   + F + A       VS+ ++AP 
Sbjct: 443 EAYLPRYLDPQYARVRPTII--TVELAGNMLYGQAFAVTFAIPAFGMFDGGVSVRLVAPS 500

Query: 438 FNTHSFSMNQRLLVLEPNGLKDVGESIHEVEVTAPGSATLAPPGFYLVFVVHQRRRIPSE 259
           F+THS +MNQRLLVL    +  +    ++ +V  P ++ +APPG+Y++FVVH  R IPS 
Sbjct: 501 FSTHSTAMNQRLLVLRVRRVSQLSVFAYKADVDGPTNSYVAPPGYYMMFVVH--RGIPSV 558

Query: 258 GIW 250
            +W
Sbjct: 559 AVW 561

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 763,339,826
Number of Sequences: 1393205
Number of extensions: 18776892
Number of successful extensions: 57145
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 54245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57085
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 40616159090
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 MF071c04_f BP032050 1 404
2 MF021f11_f BP029386 1 420
3 MF099f02_f BP033459 18 474
4 MF078g09_f BP032444 50 475
5 MPDL084h02_f AV780897 319 803




Lotus japonicus
Kazusa DNA Research Institute