Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014181A_C01 KMC014181A_c01
(637 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM97088.1| RNA-binding protein-like [Arabidopsis thaliana] 73 4e-12
dbj|BAC55617.1| putative heterogeneous nuclear ribonucleoprotein... 70 2e-11
ref|NP_568826.1| heterogeneous nuclear ribonucleoprotein (hnRNP)... 70 3e-11
gb|AAK92717.1| putative RNA-binding protein [Arabidopsis thaliana] 69 7e-11
ref|NP_566321.1| heterogeneous nuclear ribonucleoprotein (hnRNP)... 69 7e-11
>gb|AAM97088.1| RNA-binding protein-like [Arabidopsis thaliana]
Length = 448
Score = 72.8 bits (177), Expect = 4e-12
Identities = 44/101 (43%), Positives = 63/101 (61%), Gaps = 8/101 (7%)
Frame = -3
Query: 599 GYGRNHYTCV-TPSSAFNASIGVYEGSYGDLYRTGSGSVYNDSTWRS------ATSEIDD 441
G+GRN+ T SS FN +EGS G+LYR GSVY+DSTW+ ++ E+D+
Sbjct: 354 GFGRNYGTSSGLSSSPFNG----FEGSIGELYR--GGSVYSDSTWQQQQLPSQSSHELDN 407
Query: 440 -SSSFGYDLGGIESNDPVKNAEGYIGNYNVTSRQSNRGIVA 321
S ++GYD+ + S+ + E Y G+YNV +RQ+NRGI A
Sbjct: 408 LSRAYGYDIDNVGSDPSANDPETYNGSYNVGNRQTNRGIAA 448
>dbj|BAC55617.1| putative heterogeneous nuclear ribonucleoprotein A1 [Oryza sativa
(japonica cultivar-group)]
Length = 485
Score = 70.1 bits (170), Expect = 2e-11
Identities = 41/102 (40%), Positives = 56/102 (54%)
Frame = -3
Query: 632 GGDRNFGLXGGGYGRNHYTCVTPSSAFNASIGVYEGSYGDLYRTGSGSVYNDSTWRSATS 453
G +FGL G YGR++ T T F+A YE + D Y GS S+Y DSTWR +S
Sbjct: 373 GAGDSFGLPSGSYGRSNATG-TIGEPFSAPPNAYEVNNADTY--GSSSIYGDSTWRFTSS 429
Query: 452 EIDDSSSFGYDLGGIESNDPVKNAEGYIGNYNVTSRQSNRGI 327
EI D FG DLG ++ + Y+GNY V + Q++R +
Sbjct: 430 EI-DMPPFGNDLGNVDPDIKSNIPASYMGNYTVNNNQTSREV 470
>ref|NP_568826.1| heterogeneous nuclear ribonucleoprotein (hnRNP), putative; protein
id: At5g55550.1, supported by cDNA: gi_15292724,
supported by cDNA: gi_20465894 [Arabidopsis thaliana]
gi|15292725|gb|AAK92731.1| putative RNA-binding protein
[Arabidopsis thaliana] gi|20465895|gb|AAM20100.1|
putative RNA-binding protein [Arabidopsis thaliana]
Length = 460
Score = 69.7 bits (169), Expect = 3e-11
Identities = 42/98 (42%), Positives = 61/98 (61%), Gaps = 8/98 (8%)
Frame = -3
Query: 599 GYGRNHYTCV-TPSSAFNASIGVYEGSYGDLYRTGSGSVYNDSTWRS------ATSEIDD 441
G+GRN+ T SS FN +EGS G+LYR GSVY+DSTW+ ++ E+D+
Sbjct: 354 GFGRNYGTSSGLSSSPFNG----FEGSIGELYR--GGSVYSDSTWQQQQLPSQSSHELDN 407
Query: 440 -SSSFGYDLGGIESNDPVKNAEGYIGNYNVTSRQSNRG 330
S ++GYD+ + S+ + E Y G+YNV +RQ+NRG
Sbjct: 408 LSRAYGYDIDNVGSDPSANDPETYNGSYNVGNRQTNRG 445
>gb|AAK92717.1| putative RNA-binding protein [Arabidopsis thaliana]
Length = 494
Score = 68.6 bits (166), Expect = 7e-11
Identities = 41/111 (36%), Positives = 61/111 (54%), Gaps = 10/111 (9%)
Frame = -3
Query: 629 GDRNFGLXGGGYGRNHYTC--VTPSSAFNASIGVYEGSY-----GDLYRTGSGSVYNDST 471
G+ FGL GGY + PSS+F+++ Y + Y G+G+VY+D T
Sbjct: 384 GESGFGLGTGGYAARNPGANKAAPSSSFSSASATNNTGYDTAGLAEFY--GNGAVYSDPT 441
Query: 470 WRSATSEIDDSSSFGYDL-GGIESND--PVKNAEGYIGNYNVTSRQSNRGI 327
WRS T E + + F Y + GG+ S+D ++ GY+G+Y+V RQ NRGI
Sbjct: 442 WRSPTPETEGPAPFSYGIGGGVPSSDVSARSSSPGYVGSYSVNKRQPNRGI 492
>ref|NP_566321.1| heterogeneous nuclear ribonucleoprotein (hnRNP), putative; protein
id: At3g07810.1, supported by cDNA: gi_15292696,
supported by cDNA: gi_16930692 [Arabidopsis thaliana]
gi|16930693|gb|AAL32012.1|AF436830_1 AT3g07810/F17A17_15
[Arabidopsis thaliana] gi|23297627|gb|AAN12995.1|
putative RNA-binding protein [Arabidopsis thaliana]
Length = 494
Score = 68.6 bits (166), Expect = 7e-11
Identities = 41/111 (36%), Positives = 61/111 (54%), Gaps = 10/111 (9%)
Frame = -3
Query: 629 GDRNFGLXGGGYGRNHYTC--VTPSSAFNASIGVYEGSY-----GDLYRTGSGSVYNDST 471
G+ FGL GGY + PSS+F+++ Y + Y G+G+VY+D T
Sbjct: 384 GESGFGLGTGGYAARNPGANKAAPSSSFSSASATNNTGYDTAGLAEFY--GNGAVYSDPT 441
Query: 470 WRSATSEIDDSSSFGYDL-GGIESND--PVKNAEGYIGNYNVTSRQSNRGI 327
WRS T E + + F Y + GG+ S+D ++ GY+G+Y+V RQ NRGI
Sbjct: 442 WRSPTPETEGPAPFSYGIGGGVPSSDVSARSSSPGYVGSYSVNKRQPNRGI 492
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 537,248,805
Number of Sequences: 1393205
Number of extensions: 11611075
Number of successful extensions: 24818
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24755
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26439068301
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
