Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014178A_C01 KMC014178A_c01
(746 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201262.1| glycosyl hydrolase family 3; protein id: At5g64... 68 6e-19
ref|NP_196535.1| glycosyl hydrolase family 3; protein id: At5g09... 63 4e-17
ref|NP_196532.1| beta-glucosidase - like protein; protein id: At... 62 9e-16
gb|AAK38481.1| alpha-L-arabinofuranosidase/beta-D-xylosidase iso... 55 2e-14
gb|AAM00218.1|AF362990_1 beta-D-xylosidase [Prunus persica] 50 2e-10
>ref|NP_201262.1| glycosyl hydrolase family 3; protein id: At5g64570.1 [Arabidopsis
thaliana] gi|10178060|dbj|BAB11424.1| beta-xylosidase
[Arabidopsis thaliana]
Length = 784
Score = 67.8 bits (164), Expect(2) = 6e-19
Identities = 30/47 (63%), Positives = 40/47 (84%)
Frame = -3
Query: 612 KSEAQVRFMVDVCKDLSVVDELAHRRVPLGQHLLHVGNLKYPLSVRI 472
+ EA VRF V++CKDLSVVDE+ R++ LG+HLLHVG+LK+ LS+RI
Sbjct: 738 REEAVVRFKVEICKDLSVVDEIGKRKIGLGKHLLHVGDLKHSLSIRI 784
Score = 48.5 bits (114), Expect(2) = 6e-19
Identities = 20/47 (42%), Positives = 31/47 (65%)
Frame = -1
Query: 746 IHLRVKNMGKMTSSHTVLLFFTPPAVHNAPSETLVGY*ESALGQENQ 606
+H++V+N G HTV LF TPPA+H +P + LVG+ + LG+ +
Sbjct: 694 VHIKVRNGGDREGIHTVFLFTTPPAIHGSPRKHLVGFEKIRLGKREE 740
>ref|NP_196535.1| glycosyl hydrolase family 3; protein id: At5g09730.1, supported by
cDNA: gi_15450734 [Arabidopsis thaliana]
gi|11357197|pir||T49925 beta-xylosidase-like protein -
Arabidopsis thaliana gi|7671416|emb|CAB89357.1|
beta-xylosidase-like protein [Arabidopsis thaliana]
gi|9759004|dbj|BAB09531.1| beta-xylosidase [Arabidopsis
thaliana] gi|15450735|gb|AAK96639.1| AT5g09730/F17I14_80
[Arabidopsis thaliana]
Length = 773
Score = 62.8 bits (151), Expect(2) = 4e-17
Identities = 31/49 (63%), Positives = 39/49 (79%), Gaps = 1/49 (2%)
Frame = -3
Query: 615 GKSE-AQVRFMVDVCKDLSVVDELAHRRVPLGQHLLHVGNLKYPLSVRI 472
GKSE A VRF V+VCKDLSVVDE R++ LG HLLHVG+LK+ L++ +
Sbjct: 725 GKSEEAVVRFNVNVCKDLSVVDETGKRKIALGHHLLHVGSLKHSLNISV 773
Score = 47.4 bits (111), Expect(2) = 4e-17
Identities = 21/47 (44%), Positives = 29/47 (61%)
Frame = -1
Query: 746 IHLRVKNMGKMTSSHTVLLFFTPPAVHNAPSETLVGY*ESALGQENQ 606
+HL VKN G SHTV LF T P VH +P + L+G+ + LG+ +
Sbjct: 683 VHLNVKNTGDRAGSHTVFLFTTSPQVHGSPIKQLLGFEKIRLGKSEE 729
>ref|NP_196532.1| beta-glucosidase - like protein; protein id: At5g09700.1
[Arabidopsis thaliana] gi|11357195|pir||T49928
beta-glucosidase-like protein - Arabidopsis thaliana
gi|7671419|emb|CAB89360.1| beta-glucosidase-like protein
[Arabidopsis thaliana] gi|9758998|dbj|BAB09525.1|
contains similarity to beta-glucosidase~gene_id:MTH16.12
[Arabidopsis thaliana]
Length = 411
Score = 61.6 bits (148), Expect(2) = 9e-16
Identities = 27/47 (57%), Positives = 35/47 (74%)
Frame = -3
Query: 612 KSEAQVRFMVDVCKDLSVVDELAHRRVPLGQHLLHVGNLKYPLSVRI 472
K E VRF VDVCKDL VVDE+ R++ LG HLLHVG+LK+ ++ +
Sbjct: 365 KEETVVRFKVDVCKDLGVVDEIGKRKLALGHHLLHVGSLKHSFNISV 411
Score = 43.9 bits (102), Expect(2) = 9e-16
Identities = 18/47 (38%), Positives = 31/47 (65%)
Frame = -1
Query: 746 IHLRVKNMGKMTSSHTVLLFFTPPAVHNAPSETLVGY*ESALGQENQ 606
+ L+V+N+G + TV LF TPP VH +P + L+G+ + LG++ +
Sbjct: 321 VQLKVRNVGDREGTETVFLFTTPPEVHGSPRKQLLGFEKIRLGKKEE 367
>gb|AAK38481.1| alpha-L-arabinofuranosidase/beta-D-xylosidase isoenzyme ARA-I
[Hordeum vulgare]
Length = 777
Score = 55.1 bits (131), Expect(2) = 2e-14
Identities = 27/49 (55%), Positives = 36/49 (73%)
Frame = -3
Query: 618 PGKSEAQVRFMVDVCKDLSVVDELAHRRVPLGQHLLHVGNLKYPLSVRI 472
PG++ V F VDVC+DLSVVDEL R+V LG H LH G+LK+ + +R+
Sbjct: 730 PGEA-GTVAFRVDVCRDLSVVDELGGRKVALGGHTLHDGDLKHTVELRV 777
Score = 46.2 bits (108), Expect(2) = 2e-14
Identities = 18/37 (48%), Positives = 29/37 (77%)
Frame = -1
Query: 746 IHLRVKNMGKMTSSHTVLLFFTPPAVHNAPSETLVGY 636
+ L+V+N G++ +H+VLLF +PP HNAP++ LVG+
Sbjct: 687 VKLQVRNAGEVAGAHSVLLFSSPPPAHNAPAKHLVGF 723
>gb|AAM00218.1|AF362990_1 beta-D-xylosidase [Prunus persica]
Length = 461
Score = 50.4 bits (119), Expect(2) = 2e-10
Identities = 23/45 (51%), Positives = 32/45 (71%)
Frame = -3
Query: 609 SEAQVRFMVDVCKDLSVVDELAHRRVPLGQHLLHVGNLKYPLSVR 475
SE +VR V VCK LSVVD RR+PLG+H L +G+L + +S++
Sbjct: 409 SEKRVRIAVHVCKHLSVVDRFGIRRIPLGEHKLQIGDLSHHVSLQ 453
Score = 37.0 bits (84), Expect(2) = 2e-10
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = -1
Query: 746 IHLRVKNMGKMTSSHTVLLFFTPPAVHNAPSETLVGY 636
+H+ VKN G M +HT+L+F +PP A S+ L+G+
Sbjct: 364 VHVDVKNTGSMDGTHTLLVFTSPPDGKWASSKQLMGF 400
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 709,456,062
Number of Sequences: 1393205
Number of extensions: 16735301
Number of successful extensions: 68615
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 46106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61977
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36032594816
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
