Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014169A_C02 KMC014169A_c02
(531 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF23363.1|AF135962_1 CAGL2 [Cucumis sativus] 57 3e-13
emb|CAC37398.1| MADS2 protein [Cucumis sativus] 57 3e-13
emb|CAA04920.1| MdMADS9 [Malus x domestica] 54 4e-13
emb|CAA04919.1| MdMADS8 [Malus x domestica] 50 6e-13
pir||T17023 MADS box protein 1 - apple tree gi|3290209|gb|AAC259... 50 6e-13
>gb|AAF23363.1|AF135962_1 CAGL2 [Cucumis sativus]
Length = 246
Score = 57.4 bits (137), Expect(2) = 3e-13
Identities = 28/38 (73%), Positives = 31/38 (80%)
Frame = -2
Query: 524 RQSWDQAGDRSMQYGGSQNAHSQGFFQPLECNPTLQIG 411
R +WD GD+SM YG QNA +QGFFQPLECNPTLQIG
Sbjct: 181 RLTWD-GGDQSMSYG-PQNAQTQGFFQPLECNPTLQIG 216
Score = 38.9 bits (89), Expect(2) = 3e-13
Identities = 18/30 (60%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
Frame = -1
Query: 291 YHGVASDQMAATT---QAQQVNGFIPGWML 211
Y SDQ+ +TT AQQVNGF+PGWML
Sbjct: 217 YTSAVSDQITSTTTPTHAQQVNGFLPGWML 246
>emb|CAC37398.1| MADS2 protein [Cucumis sativus]
Length = 191
Score = 57.4 bits (137), Expect(2) = 3e-13
Identities = 28/38 (73%), Positives = 31/38 (80%)
Frame = -2
Query: 524 RQSWDQAGDRSMQYGGSQNAHSQGFFQPLECNPTLQIG 411
R +WD GD+SM YG QNA +QGFFQPLECNPTLQIG
Sbjct: 126 RLTWD-GGDQSMSYG-PQNAQTQGFFQPLECNPTLQIG 161
Score = 38.9 bits (89), Expect(2) = 3e-13
Identities = 18/30 (60%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
Frame = -1
Query: 291 YHGVASDQMAATT---QAQQVNGFIPGWML 211
Y SDQ+ +TT AQQVNGF+PGWML
Sbjct: 162 YTSAVSDQITSTTTPTHAQQVNGFLPGWML 191
>emb|CAA04920.1| MdMADS9 [Malus x domestica]
Length = 242
Score = 53.5 bits (127), Expect(2) = 4e-13
Identities = 26/39 (66%), Positives = 30/39 (76%), Gaps = 1/39 (2%)
Frame = -2
Query: 524 RQSWDQAGDRSMQYGGSQN-AHSQGFFQPLECNPTLQIG 411
RQSW+ GD+ M YG + A SQGFFQPL+CNPTLQIG
Sbjct: 178 RQSWE-GGDQGMAYGTQHHHAQSQGFFQPLDCNPTLQIG 215
Score = 42.0 bits (97), Expect(2) = 4e-13
Identities = 19/27 (70%), Positives = 20/27 (73%)
Frame = -1
Query: 291 YHGVASDQMAATTQAQQVNGFIPGWML 211
Y S+QM ATT AQQVN FIPGWML
Sbjct: 216 YPAEGSEQMGATTHAQQVNCFIPGWML 242
>emb|CAA04919.1| MdMADS8 [Malus x domestica]
Length = 246
Score = 50.1 bits (118), Expect(2) = 6e-13
Identities = 24/39 (61%), Positives = 29/39 (73%), Gaps = 1/39 (2%)
Frame = -2
Query: 524 RQSWDQAGDRSMQYGGSQN-AHSQGFFQPLECNPTLQIG 411
RQSW+ GD+ M Y + A SQGFFQPL+CNPTLQ+G
Sbjct: 182 RQSWE-GGDQGMAYATQHHHAQSQGFFQPLDCNPTLQMG 219
Score = 45.1 bits (105), Expect(2) = 6e-13
Identities = 20/27 (74%), Positives = 22/27 (81%)
Frame = -1
Query: 291 YHGVASDQMAATTQAQQVNGFIPGWML 211
Y V S+QM+ATT AQQVN FIPGWML
Sbjct: 220 YSAVGSEQMSATTNAQQVNCFIPGWML 246
>pir||T17023 MADS box protein 1 - apple tree gi|3290209|gb|AAC25922.1| MADS-box
protein 1 [Malus x domestica]
Length = 246
Score = 50.1 bits (118), Expect(2) = 6e-13
Identities = 24/39 (61%), Positives = 29/39 (73%), Gaps = 1/39 (2%)
Frame = -2
Query: 524 RQSWDQAGDRSMQYGGSQN-AHSQGFFQPLECNPTLQIG 411
RQSW+ GD+ M Y + A SQGFFQPL+CNPTLQ+G
Sbjct: 182 RQSWE-GGDQGMAYATQHHHAQSQGFFQPLDCNPTLQMG 219
Score = 45.1 bits (105), Expect(2) = 6e-13
Identities = 20/27 (74%), Positives = 22/27 (81%)
Frame = -1
Query: 291 YHGVASDQMAATTQAQQVNGFIPGWML 211
Y V S+QM+ATT AQQVN FIPGWML
Sbjct: 220 YSAVGSEQMSATTNAQQVNCFIPGWML 246
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 471,161,291
Number of Sequences: 1393205
Number of extensions: 9929301
Number of successful extensions: 25946
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 25064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25885
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
