Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014161A_C01 KMC014161A_c01
(505 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD02547.1| PGPS/D5 [Petunia x hybrida] 36 0.22
ref|NP_193160.1| hypothetical protein; protein id: At4g14240.1 [... 35 0.63
gb|AAO49111.1| NADH dehydrogenase 5 [Sceliphron sp. MD1] 34 0.82
sp|P15583|NU5M_LEITA NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 gi|8... 33 2.4
ref|NP_047348.1| cop protein [Lactococcus lactis] gi|11356452|pi... 32 3.1
>gb|AAD02547.1| PGPS/D5 [Petunia x hybrida]
Length = 65
Score = 36.2 bits (82), Expect = 0.22
Identities = 18/31 (58%), Positives = 21/31 (67%)
Frame = -2
Query: 504 VHRRIRFAAVAAASFVARVPLVRKLNHDSLA 412
VH+RIR AA AAAS VAR P +R+L A
Sbjct: 31 VHKRIRVAAAAAASSVARAPSIRRLTAQKAA 61
>ref|NP_193160.1| hypothetical protein; protein id: At4g14240.1 [Arabidopsis
thaliana] gi|7485013|pir||A71404 hypothetical protein -
Arabidopsis thaliana gi|2244780|emb|CAB10203.1|
hypothetical protein [Arabidopsis thaliana]
gi|7268129|emb|CAB78466.1| hypothetical protein
[Arabidopsis thaliana]
Length = 514
Score = 34.7 bits (78), Expect = 0.63
Identities = 17/25 (68%), Positives = 19/25 (76%)
Frame = -2
Query: 504 VHRRIRFAAVAAASFVARVPLVRKL 430
VH+RIR AA AAAS +AR P RKL
Sbjct: 452 VHKRIRVAAAAAASSIARAPSSRKL 476
>gb|AAO49111.1| NADH dehydrogenase 5 [Sceliphron sp. MD1]
Length = 201
Score = 34.3 bits (77), Expect = 0.82
Identities = 22/67 (32%), Positives = 34/67 (49%), Gaps = 3/67 (4%)
Frame = -1
Query: 277 LPVYILFVWQLVLFDVRIAYHSIE*IVTLFLFYS---FYENIGLGFWNFFLIFLFSKQFC 107
L +Y+L +W LV+F Y ++ L+LF + FY+N G + LI+ F F
Sbjct: 120 LKIYLLSMWGLVIF-----YENL----NLYLFKNVLLFYKNFDKGLLEYKLIYSFKNMFM 170
Query: 106 LNQLYFM 86
L L F+
Sbjct: 171 LELLKFL 177
>sp|P15583|NU5M_LEITA NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 gi|83998|pir||A26696 NADH2
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 -
Leishmania tarentolae mitochondrion (fragment)
Length = 101
Score = 32.7 bits (73), Expect = 2.4
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = -1
Query: 265 ILFVWQLVLFDVRIAYHSIE*IVTLFLFYSFYENIGLGFWNFFLIFLFSKQFCL 104
I+F W++ LF I + I T + F FY I + WN + F ++ ++CL
Sbjct: 41 IMFFWRVFLF---ITMGFLFFIFTTWYFICFYMYICMFIWNLVIYFRYNLKYCL 91
>ref|NP_047348.1| cop protein [Lactococcus lactis] gi|11356452|pir||T43135 cop
protein - Lactococcus lactis plasmid pMRC01
gi|3582229|gb|AAC56025.1| cop protein [Lactococcus
lactis]
Length = 87
Score = 32.3 bits (72), Expect = 3.1
Identities = 14/42 (33%), Positives = 27/42 (63%)
Frame = -1
Query: 244 VLFDVRIAYHSIE*IVTLFLFYSFYENIGLGFWNFFLIFLFS 119
+LF +R +H++ + TL +Y++++NI L F+ FF F +
Sbjct: 46 LLFPLRFQFHNL--LKTLLNYYNYFQNIHLIFFQFFYSFFLA 85
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 402,870,747
Number of Sequences: 1393205
Number of extensions: 8076109
Number of successful extensions: 17001
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 16427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16992
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
