Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014158A_C01 KMC014158A_c01
(555 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196286.1| gamma-tubulin interacting protein-like; protein... 65 6e-10
sp|O73787|GCP3_XENLA Gamma-tubulin complex component 3 homolog (... 35 0.80
emb|CAD61165.1| SI:dZ75P05.1 (novel protein similar to human spi... 34 1.4
emb|CAA05832.1| most expressed alternative spliced form [Homo sa... 34 1.4
ref|NP_006313.1| spindle pole body protein [Homo sapiens] gi|213... 34 1.4
>ref|NP_196286.1| gamma-tubulin interacting protein-like; protein id: At5g06680.1,
supported by cDNA: gi_20466521 [Arabidopsis thaliana]
gi|9759296|dbj|BAB09802.1| gamma-tubulin interacting
protein-like [Arabidopsis thaliana]
gi|20466522|gb|AAM20578.1| gamma-tubulin interacting
protein-like [Arabidopsis thaliana]
Length = 838
Score = 65.1 bits (157), Expect = 6e-10
Identities = 29/49 (59%), Positives = 39/49 (79%)
Frame = -2
Query: 554 RNMEQDLDAMXTDYSSLQEEFISQLPVQQHVDLKFLFFRLDFNEFYGRL 408
++M QD+D++ +Y+S + F+S LP+QQ VDLKFLFFRLDF EFY RL
Sbjct: 786 QSMSQDMDSIAKEYTSSLDGFLSLLPLQQSVDLKFLFFRLDFTEFYSRL 834
>sp|O73787|GCP3_XENLA Gamma-tubulin complex component 3 homolog (Gamma ring complex
protein 109) (Xgrip109) (x109p)
gi|2981463|gb|AAC06304.1| gamma-tubulin interacting
protein [Xenopus laevis]
Length = 906
Score = 34.7 bits (78), Expect = 0.80
Identities = 17/51 (33%), Positives = 24/51 (46%)
Frame = -2
Query: 548 MEQDLDAMXTDYSSLQEEFISQLPVQQHVDLKFLFFRLDFNEFYGRLSPSM 396
M L + Y + ++F+ L L+FL FRLDFNE Y P +
Sbjct: 842 MRSQLRILTHFYQGIVQQFLVLLTTSTDESLRFLSFRLDFNEHYKAREPRL 892
>emb|CAD61165.1| SI:dZ75P05.1 (novel protein similar to human spindle pole body
protein (SPC98P, GCP3)) [Danio rerio]
Length = 624
Score = 33.9 bits (76), Expect = 1.4
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = -2
Query: 515 YSSLQEEFISQLPVQQHVDLKFLFFRLDFNEFY----GRLSPSM 396
Y + +EF+ L L+FL FRLDFNE Y RL PS+
Sbjct: 570 YQGIVQEFLRLLMTCSDESLQFLSFRLDFNEHYKARDPRLRPSL 613
>emb|CAA05832.1| most expressed alternative spliced form [Homo sapiens]
Length = 907
Score = 33.9 bits (76), Expect = 1.4
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 515 YSSLQEEFISQLPVQQHVDLKFLFFRLDFNEFYGRLSPSM 396
Y + ++F+ L L+FL FRLDFNE Y P +
Sbjct: 854 YQGIVQQFLVLLTTSSDESLRFLSFRLDFNEHYKAREPRL 893
>ref|NP_006313.1| spindle pole body protein [Homo sapiens]
gi|21362575|sp|Q96CW5|GCP3_HUMAN Gamma-tubulin complex
component 3 (GCP-3) (Spindle pole body protein Spc98
homolog) (hSpc98) (hGCP3) (h104p)
gi|2801699|gb|AAC39727.1| spindle pole body protein
spc98 homolog GCP3 [Homo sapiens]
gi|28302322|gb|AAH46634.1| tubulin, gamma complex
associated protein 3 [Homo sapiens]
Length = 907
Score = 33.9 bits (76), Expect = 1.4
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 515 YSSLQEEFISQLPVQQHVDLKFLFFRLDFNEFYGRLSPSM 396
Y + ++F+ L L+FL FRLDFNE Y P +
Sbjct: 854 YQGIVQQFLVLLTTSSDESLRFLSFRLDFNEHYKAREPRL 893
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 447,553,013
Number of Sequences: 1393205
Number of extensions: 8690756
Number of successful extensions: 18761
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 18379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18758
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
