Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014157A_C01 KMC014157A_c01
(516 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197062.1| putative protein; protein id: At5g15580.1 [Arab... 52 5e-06
ref|NP_173297.1| unknown protein; protein id: At1g18620.1, suppo... 50 2e-05
ref|NP_177556.1| unknown protein; protein id: At1g74160.1 [Arabi... 47 1e-04
ref|NP_566165.2| expressed protein; protein id: At3g02170.1, sup... 41 0.007
gb|AAL07210.1| unknown protein [Arabidopsis thaliana] 41 0.007
>ref|NP_197062.1| putative protein; protein id: At5g15580.1 [Arabidopsis thaliana]
gi|11358126|pir||T51536 hypothetical protein T20K14_190 -
Arabidopsis thaliana gi|9755813|emb|CAC01757.1| putative
protein [Arabidopsis thaliana]
Length = 927
Score = 51.6 bits (122), Expect = 5e-06
Identities = 32/71 (45%), Positives = 41/71 (57%)
Frame = -3
Query: 508 LCTDIDQLQPPHRNVRVASDDENLSSVLCGDWKHHHPIWTNCCSEIPNAVLDIERLIFKD 329
LC++ID+LQ + + + DDE+L + D + H W E P VLDIERLIFKD
Sbjct: 845 LCSEIDRLQDNSKCI-LDEDDEDL---IWEDLQSHGMNWKEIEGETPGLVLDIERLIFKD 900
Query: 328 LITEAVKGEVA 296
LI E V E A
Sbjct: 901 LIGEVVTSEFA 911
>ref|NP_173297.1| unknown protein; protein id: At1g18620.1, supported by cDNA:
gi_20856608 [Arabidopsis thaliana]
gi|25518757|pir||H86319 hypothetical protein F26I16.4 -
Arabidopsis thaliana gi|9795593|gb|AAF98411.1|AC026238_3
Unknown protein [Arabidopsis thaliana]
gi|20856609|gb|AAM26675.1| At1g18620/F25I16_13
[Arabidopsis thaliana]
Length = 978
Score = 49.7 bits (117), Expect = 2e-05
Identities = 32/89 (35%), Positives = 46/89 (50%), Gaps = 9/89 (10%)
Frame = -3
Query: 511 ELCTDIDQLQPPHR----NVRVASDDEN-----LSSVLCGDWKHHHPIWTNCCSEIPNAV 359
ELC++I+ LQ + N+ + ++E L +L D WT+ IP V
Sbjct: 882 ELCSEIEILQKQAKKRSENLLLLEEEEEEEEDFLKCILDEDMAIQSEKWTDFDDAIPGLV 941
Query: 358 LDIERLIFKDLITEAVKGEVANLCGRHCR 272
LD+ERL+FKDL+ E V GE+ L G R
Sbjct: 942 LDMERLLFKDLVKEIVHGEIDRLQGNSRR 970
>ref|NP_177556.1| unknown protein; protein id: At1g74160.1 [Arabidopsis thaliana]
gi|25406317|pir||G96769 unknown protein F9E11.1
[imported] - Arabidopsis thaliana
gi|12323815|gb|AAG51874.1|AC079678_4 unknown protein;
20090-16103 [Arabidopsis thaliana]
Length = 1028
Score = 47.4 bits (111), Expect = 1e-04
Identities = 27/78 (34%), Positives = 39/78 (49%), Gaps = 4/78 (5%)
Frame = -3
Query: 511 ELCTDIDQLQPP----HRNVRVASDDENLSSVLCGDWKHHHPIWTNCCSEIPNAVLDIER 344
ELC+ I+ Q N + +D+ L S+L D W + E+ VLD+ER
Sbjct: 937 ELCSAIETQQKQATKRSENFLLEEEDDFLKSILAEDVTIRSGNWADFSGEMSGLVLDVER 996
Query: 343 LIFKDLITEAVKGEVANL 290
L+FKDL+ E V E + L
Sbjct: 997 LVFKDLVNEIVHAETSRL 1014
>ref|NP_566165.2| expressed protein; protein id: At3g02170.1, supported by cDNA:
gi_15810132 [Arabidopsis thaliana]
gi|6041800|gb|AAF02120.1|AC009755_13 unknown protein
[Arabidopsis thaliana]
gi|6513917|gb|AAF14821.1|AC011664_3 unknown protein
[Arabidopsis thaliana] gi|23297751|gb|AAN13017.1| unknown
protein [Arabidopsis thaliana]
Length = 905
Score = 41.2 bits (95), Expect = 0.007
Identities = 23/64 (35%), Positives = 36/64 (55%)
Frame = -3
Query: 508 LCTDIDQLQPPHRNVRVASDDENLSSVLCGDWKHHHPIWTNCCSEIPNAVLDIERLIFKD 329
LC++ID+LQ + N + D+E+ ++ D + E P VLDIER+IF+D
Sbjct: 841 LCSEIDRLQQNNSNCILEDDEED---IIWEDLQSQSMNLKEFEGETPGIVLDIERMIFRD 897
Query: 328 LITE 317
L+ E
Sbjct: 898 LVNE 901
>gb|AAL07210.1| unknown protein [Arabidopsis thaliana]
Length = 905
Score = 41.2 bits (95), Expect = 0.007
Identities = 23/64 (35%), Positives = 36/64 (55%)
Frame = -3
Query: 508 LCTDIDQLQPPHRNVRVASDDENLSSVLCGDWKHHHPIWTNCCSEIPNAVLDIERLIFKD 329
LC++ID+LQ + N + D+E+ ++ D + E P VLDIER+IF+D
Sbjct: 841 LCSEIDRLQQNNSNCILEDDEED---IIWEDLQSQSMNLKEFEGETPGIVLDIERMIFRD 897
Query: 328 LITE 317
L+ E
Sbjct: 898 LVNE 901
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 424,667,696
Number of Sequences: 1393205
Number of extensions: 8739668
Number of successful extensions: 23564
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 22603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23532
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
