Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014142A_C01 KMC014142A_c01
(492 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_562005.1| hypothetical protein [Clostridium perfringens] ... 40 0.014
pir||S77610 probable intercellular adhesion protein C - Staphylo... 37 0.15
ref|NP_248535.1| conserved hypothetical protein [Methanococcus j... 37 0.15
sp|P81376|CYB_PLAGA Cytochrome b gi|84249|pir||A32566 ubiquinol-... 34 1.00
gb|AAK18071.1|AF246927_1 IcaC [Staphylococcus caprae] 34 1.00
>ref|NP_562005.1| hypothetical protein [Clostridium perfringens]
gi|18144750|dbj|BAB80795.1| hypothetical protein
[Clostridium perfringens str. 13]
Length = 154
Score = 40.0 bits (92), Expect = 0.014
Identities = 24/100 (24%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Frame = -2
Query: 314 IYSSLLLLVDLYFASKVFIKFHYISYQLPKILNFITFILGIVILLALLRYLLFVLVRGSQ 135
I+S + + ++++ +K + K+ + + LNF+ LG++ L +L F+LV S
Sbjct: 7 IFSIICIPINIFLKNKFYSKYFKRYFLIALFLNFLALFLGLIFHKYLDEFLYFILVNSSY 66
Query: 134 ERTMLGLFLLHRSDEYVVRALTSCADLLFMNL-LFIVFVI 18
+++ L +D+Y+++ L +F++L LF++F++
Sbjct: 67 -LSVVYRGNLKLNDKYILKHLIKA--FVFLSLALFLIFIV 103
>pir||S77610 probable intercellular adhesion protein C - Staphylococcus
epidermidis gi|1161382|gb|AAC06119.1| IcaC
[Staphylococcus epidermidis] gi|23345089|gb|AAN17774.1|
intercellular adhesion protein IcaC [Staphylococcus
epidermidis]
Length = 355
Score = 36.6 bits (83), Expect = 0.15
Identities = 19/37 (51%), Positives = 24/37 (64%)
Frame = -2
Query: 248 YISYQLPKILNFITFILGIVILLALLRYLLFVLVRGS 138
YI Y KIL+F+ L IVI+L L Y+LF+ V GS
Sbjct: 200 YIGYNYEKILSFLEKYLIIVIMLTLGAYVLFIAVSGS 236
>ref|NP_248535.1| conserved hypothetical protein [Methanococcus jannaschii]
gi|11387350|sp|Q58922|YF27_METJA Hypothetical protein
MJ1527 gi|2128919|pir||F64490 hypothetical protein
MJ1527 - Methanococcus jannaschii
gi|1592157|gb|AAB99545.1| conserved hypothetical protein
[Methanococcus jannaschii]
Length = 140
Score = 36.6 bits (83), Expect = 0.15
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Frame = -2
Query: 290 VDLYFASKVFIKFHYISYQLPK-ILNFITFILGIVI---LLALLRYLLFVLVRGSQERTM 123
+++Y SKVFIK+H L +LNF+ ++ + + + +L YLLF + +
Sbjct: 1 MNIYLISKVFIKYHLFQNILKSYLLNFLVRLMALGLDRNMEGVLCYLLFWI-------SG 53
Query: 122 LGLFLLHRSDEYV-VRALTSCADLLFMNLLFIV 27
L LL R D+++ A+ S L +NL+ I+
Sbjct: 54 LIFLLLEREDDFIRFHAMQSFITFLSLNLIAII 86
>sp|P81376|CYB_PLAGA Cytochrome b gi|84249|pir||A32566 ubiquinol-cytochrome-c reductase
(EC 1.10.2.2) cytochrome b - Plasmodium gallinaceum
mitochondrion
Length = 300
Score = 33.9 bits (76), Expect = 1.00
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Frame = -2
Query: 257 KFHYISYQLPKILNFIT---FILGIVILLALLRYLLFVLVRGSQERTMLGLFLLHRSDEY 87
K H + Y P +NF+ F+LGIV + +L+ +L LV + L + S ++
Sbjct: 10 KAHLLHYPCPLNINFLWNYGFLLGIVFFIQILKGVLLALV------ILQKLSYAYYSVQH 63
Query: 86 VVRALTSCADLLFMNLLFIVFVIIITLL 3
++RA+ +M+ FV I+T L
Sbjct: 64 ILRAIMDGWCFRYMHATGASFVFILTYL 91
>gb|AAK18071.1|AF246927_1 IcaC [Staphylococcus caprae]
Length = 357
Score = 33.9 bits (76), Expect = 1.00
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = -2
Query: 248 YISYQLPKILNFITFILGIVILLALLRYLLFVLVRG 141
YI Y ++L+F+ L I+I+LAL Y+LF+ + G
Sbjct: 200 YIGYNYERVLSFLEKYLVIMIMLALGSYVLFIAISG 235
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 392,211,177
Number of Sequences: 1393205
Number of extensions: 7917590
Number of successful extensions: 19997
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 19535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19980
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14203329973
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
