Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014140A_C01 KMC014140A_c01
(580 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL58915.1|AF462826_1 At1g50840/F8A12_8 [Arabidopsis thaliana... 91 8e-18
ref|NP_175498.2| DNA polymerase A family protein, putative; prot... 91 8e-18
dbj|BAB40805.2| PolI-like DNA polymerase [Oryza sativa] 89 5e-17
pir||D96545 probable DNA polymerase A family protein [imported] ... 88 9e-17
ref|NP_188690.1| DNA polymerase, putative; protein id: At3g20540... 83 2e-15
>gb|AAL58915.1|AF462826_1 At1g50840/F8A12_8 [Arabidopsis thaliana] gi|20259545|gb|AAM13892.1|
putative DNA polymerase A family protein [Arabidopsis
thaliana]
Length = 1049
Score = 91.3 bits (225), Expect = 8e-18
Identities = 42/57 (73%), Positives = 50/57 (87%)
Frame = -3
Query: 572 VLLQVHDEVILEGPTDSAEVAKAIVIECMSKPFNGKHILKVALSVDAKIALNWYAGK 402
+LLQ+HDEVILEGP +SAE+AK IV++CMSKPFNG++IL V LSVDAK A NWYA K
Sbjct: 993 LLLQIHDEVILEGPIESAEIAKDIVVDCMSKPFNGRNILSVDLSVDAKCAQNWYAAK 1049
>ref|NP_175498.2| DNA polymerase A family protein, putative; protein id: At1g50840.1,
supported by cDNA: gi_18087567, supported by cDNA:
gi_20259544 [Arabidopsis thaliana]
Length = 1050
Score = 91.3 bits (225), Expect = 8e-18
Identities = 42/57 (73%), Positives = 50/57 (87%)
Frame = -3
Query: 572 VLLQVHDEVILEGPTDSAEVAKAIVIECMSKPFNGKHILKVALSVDAKIALNWYAGK 402
+LLQ+HDEVILEGP +SAE+AK IV++CMSKPFNG++IL V LSVDAK A NWYA K
Sbjct: 994 LLLQIHDEVILEGPIESAEIAKDIVVDCMSKPFNGRNILSVDLSVDAKCAQNWYAAK 1050
>dbj|BAB40805.2| PolI-like DNA polymerase [Oryza sativa]
Length = 976
Score = 88.6 bits (218), Expect = 5e-17
Identities = 43/57 (75%), Positives = 49/57 (85%)
Frame = -3
Query: 572 VLLQVHDEVILEGPTDSAEVAKAIVIECMSKPFNGKHILKVALSVDAKIALNWYAGK 402
+LLQVHDEVILEGPT+SAE AK IV+ECMSKPF G +ILKV L+VDAK A +WYA K
Sbjct: 920 LLLQVHDEVILEGPTESAEEAKTIVVECMSKPFYGTNILKVDLAVDAKYAKSWYAAK 976
>pir||D96545 probable DNA polymerase A family protein [imported] - Arabidopsis
thaliana gi|12321800|gb|AAG50942.1|AC079284_17 DNA
polymerase A family protein, putative [Arabidopsis
thaliana]
Length = 1067
Score = 87.8 bits (216), Expect = 9e-17
Identities = 40/54 (74%), Positives = 47/54 (86%)
Frame = -3
Query: 563 QVHDEVILEGPTDSAEVAKAIVIECMSKPFNGKHILKVALSVDAKIALNWYAGK 402
Q+HDEVILEGP +SAE+AK IV++CMSKPFNG++IL V LSVDAK A NWYA K
Sbjct: 1014 QIHDEVILEGPIESAEIAKDIVVDCMSKPFNGRNILSVDLSVDAKCAQNWYAAK 1067
>ref|NP_188690.1| DNA polymerase, putative; protein id: At3g20540.1 [Arabidopsis
thaliana]
Length = 1160
Score = 83.2 bits (204), Expect = 2e-15
Identities = 40/54 (74%), Positives = 47/54 (86%)
Frame = -3
Query: 575 EVLLQVHDEVILEGPTDSAEVAKAIVIECMSKPFNGKHILKVALSVDAKIALNW 414
++LLQVHDEVILEGP++SAE AK IV+ CMS+PFNGK+IL V LSVDAK A NW
Sbjct: 973 KLLLQVHDEVILEGPSESAENAKDIVVNCMSEPFNGKNILSVDLSVDAKCAQNW 1026
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 501,564,827
Number of Sequences: 1393205
Number of extensions: 10581438
Number of successful extensions: 25382
Number of sequences better than 10.0: 129
Number of HSP's better than 10.0 without gapping: 24882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25372
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
