Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014123A_C01 KMC014123A_c01
(570 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA08772.1| putative kinase [Arabidopsis thaliana] 35 0.51
ref|NP_180839.1| putative protein kinase; protein id: At2g32800.... 35 0.86
gb|AAK18743.1| brain RPTPmam4 isoform III [Mus musculus] 32 4.3
gb|AAK18741.1| brain RPTPmam4 isoform I [Mus musculus] 32 4.3
gb|AAF82401.1|AF162857_1 receptor-like protein tyrosine phosphat... 32 4.3
>emb|CAA08772.1| putative kinase [Arabidopsis thaliana]
Length = 539
Score = 35.4 bits (80), Expect = 0.51
Identities = 24/79 (30%), Positives = 36/79 (45%)
Frame = +1
Query: 331 HIHFKKALLSHKVYSLKTIAMQLKRLCMVWPPHSGDLKQPEMGVQQAFQSAKEQAQARKP 510
H H K + + M + LC V P SG+LK P M V++ + +E K
Sbjct: 71 HYHIFKFIHISISLHIHMAPMAMDHLCFVLPTESGELKPPVM-VEETTEEEEE-----KK 124
Query: 511 HRACGEQVLA*LHDSLSKL 567
R CG QV++ + D +L
Sbjct: 125 SRDCGRQVVSLIGDLFRRL 143
>ref|NP_180839.1| putative protein kinase; protein id: At2g32800.1, supported by
cDNA: gi_13877680 [Arabidopsis thaliana]
gi|7488255|pir||T00788 probable protein kinase
[imported] - Arabidopsis thaliana
gi|2914693|gb|AAC04483.1| putative protein kinase
[Arabidopsis thaliana]
gi|13877681|gb|AAK43918.1|AF370599_1 putative protein
kinase [Arabidopsis thaliana]
Length = 848
Score = 34.7 bits (78), Expect = 0.86
Identities = 21/59 (35%), Positives = 31/59 (51%)
Frame = +1
Query: 391 MQLKRLCMVWPPHSGDLKQPEMGVQQAFQSAKEQAQARKPHRACGEQVLA*LHDSLSKL 567
M + LC V P SG+LK P M V++ + +E K R CG QV++ + D +L
Sbjct: 1 MAMDHLCFVLPTESGELKPPVM-VEETTEEEEE-----KKSRDCGRQVVSLIGDLFRRL 53
>gb|AAK18743.1| brain RPTPmam4 isoform III [Mus musculus]
Length = 1455
Score = 32.3 bits (72), Expect = 4.3
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -3
Query: 541 KQELAPHKPCEAFWPELVPLQIER--LVGHPFQVASDHLNVVAKPCR 407
K ELA FWP + E L GHP +A D + V+A PCR
Sbjct: 152 KAELA----ISTFWPHFYQVIFESVSLKGHPGYIAVDEVRVLAHPCR 194
>gb|AAK18741.1| brain RPTPmam4 isoform I [Mus musculus]
Length = 1454
Score = 32.3 bits (72), Expect = 4.3
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -3
Query: 541 KQELAPHKPCEAFWPELVPLQIER--LVGHPFQVASDHLNVVAKPCR 407
K ELA FWP + E L GHP +A D + V+A PCR
Sbjct: 152 KAELA----ISTFWPHFYQVIFESVSLKGHPGYIAVDEVRVLAHPCR 194
>gb|AAF82401.1|AF162857_1 receptor-like protein tyrosine phosphatase rho-2 [Mus musculus]
Length = 1444
Score = 32.3 bits (72), Expect = 4.3
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -3
Query: 541 KQELAPHKPCEAFWPELVPLQIER--LVGHPFQVASDHLNVVAKPCR 407
K ELA FWP + E L GHP +A D + V+A PCR
Sbjct: 152 KAELA----ISTFWPHFYQVIFESVSLKGHPGYIAVDEVRVLAHPCR 194
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 501,242,054
Number of Sequences: 1393205
Number of extensions: 10575925
Number of successful extensions: 29753
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 29026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29719
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
