Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014113A_C01 KMC014113A_c01
(622 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175996.2| hypothetical protein; protein id: At1g56000.1, ... 214 9e-55
pir||B96601 hypothetical protein T6H22.20 [imported] - Arabidops... 214 9e-55
gb|AAF79325.1|AC002304_18 F14J16.31 [Arabidopsis thaliana] 172 4e-42
pir||A96601 hypothetical protein T6H22.21 [imported] - Arabidops... 129 3e-29
gb|AAF79330.1|AC002304_23 F14J16.28 [Arabidopsis thaliana] 129 3e-29
>ref|NP_175996.2| hypothetical protein; protein id: At1g56000.1, supported by cDNA:
gi_17978975 [Arabidopsis thaliana]
gi|17978976|gb|AAL47449.1| T6H22.19/T6H22.19
[Arabidopsis thaliana] gi|22655396|gb|AAM98290.1|
At1g55980/T6H22.19 [Arabidopsis thaliana]
Length = 384
Score = 214 bits (544), Expect = 9e-55
Identities = 99/144 (68%), Positives = 122/144 (83%)
Frame = -2
Query: 612 IPVKGLSFKNSKVLSWAYCDSSKPNRSTTSERWVLHSTAEYAQDIIAQTGLKKPSDITLS 433
IPVKGLSFKNS++LSWA+C+S+KP RST SERW+LHST +YA +IA+TGL+K S TL+
Sbjct: 241 IPVKGLSFKNSEILSWAHCESTKPGRSTDSERWILHSTPDYANSVIAKTGLQKLSSETLN 300
Query: 432 KVAEELFQEFQNTGLNISQPFFKRAHRWGSAFPATSVAPENKCLWDRNKRLAICGDFCVS 253
K++EE+F+EFQ +GL S PFF +AHRWGSAFPA S+A E +CLWDRN+ LAICGDFCVS
Sbjct: 301 KISEEMFKEFQCSGLVSSLPFFMKAHRWGSAFPAKSIAVEERCLWDRNRNLAICGDFCVS 360
Query: 252 PNVEGAIESGMAAALRLKDSVSCL 181
PNVEGAI SG+AAA +L + SCL
Sbjct: 361 PNVEGAILSGLAAASKLLQTSSCL 384
>pir||B96601 hypothetical protein T6H22.20 [imported] - Arabidopsis thaliana
gi|6056384|gb|AAF02848.1|AC009894_19 Hypothetical
protein [Arabidopsis thaliana]
Length = 396
Score = 214 bits (544), Expect = 9e-55
Identities = 99/144 (68%), Positives = 122/144 (83%)
Frame = -2
Query: 612 IPVKGLSFKNSKVLSWAYCDSSKPNRSTTSERWVLHSTAEYAQDIIAQTGLKKPSDITLS 433
IPVKGLSFKNS++LSWA+C+S+KP RST SERW+LHST +YA +IA+TGL+K S TL+
Sbjct: 253 IPVKGLSFKNSEILSWAHCESTKPGRSTDSERWILHSTPDYANSVIAKTGLQKLSSETLN 312
Query: 432 KVAEELFQEFQNTGLNISQPFFKRAHRWGSAFPATSVAPENKCLWDRNKRLAICGDFCVS 253
K++EE+F+EFQ +GL S PFF +AHRWGSAFPA S+A E +CLWDRN+ LAICGDFCVS
Sbjct: 313 KISEEMFKEFQCSGLVSSLPFFMKAHRWGSAFPAKSIAVEERCLWDRNRNLAICGDFCVS 372
Query: 252 PNVEGAIESGMAAALRLKDSVSCL 181
PNVEGAI SG+AAA +L + SCL
Sbjct: 373 PNVEGAILSGLAAASKLLQTSSCL 396
>gb|AAF79325.1|AC002304_18 F14J16.31 [Arabidopsis thaliana]
Length = 444
Score = 172 bits (435), Expect = 4e-42
Identities = 88/157 (56%), Positives = 114/157 (72%), Gaps = 13/157 (8%)
Frame = -2
Query: 612 IPVKGLSFKNSKVLSWAYCDSSKPNRSTTS-------------ERWVLHSTAEYAQDIIA 472
IPVKGLSFKNS++LSWA+C+S+KP RST S ERW+LHST +YA +IA
Sbjct: 291 IPVKGLSFKNSEILSWAHCESTKPGRSTDSVLNSECYYLDFFSERWILHSTPDYANSVIA 350
Query: 471 QTGLKKPSDITLSKVAEELFQEFQNTGLNISQPFFKRAHRWGSAFPATSVAPENKCLWDR 292
+TGL+K S TL+K++EE+F+EFQ +GL +S K + + F + S+A E +CLWDR
Sbjct: 351 KTGLQKLSSETLNKISEEMFKEFQCSGLMVSVLTLKPSV---NLFASKSIAVEERCLWDR 407
Query: 291 NKRLAICGDFCVSPNVEGAIESGMAAALRLKDSVSCL 181
N+ LAICGDFCVSPNVEGAI SG+AAA +L + SCL
Sbjct: 408 NRNLAICGDFCVSPNVEGAILSGLAAASKLLQTSSCL 444
>pir||A96601 hypothetical protein T6H22.21 [imported] - Arabidopsis thaliana
gi|6056386|gb|AAF02850.1|AC009894_21 Hypothetical
protein [Arabidopsis thaliana]
Length = 418
Score = 129 bits (324), Expect = 3e-29
Identities = 58/88 (65%), Positives = 75/88 (84%)
Frame = -2
Query: 612 IPVKGLSFKNSKVLSWAYCDSSKPNRSTTSERWVLHSTAEYAQDIIAQTGLKKPSDITLS 433
IPVKGLSFKNS++LSWA+C+S+KP RST SERW+LHST +YA +IA+TGL+K S TL+
Sbjct: 331 IPVKGLSFKNSEILSWAHCESTKPGRSTDSERWILHSTPDYANSVIAKTGLQKLSSETLN 390
Query: 432 KVAEELFQEFQNTGLNISQPFFKRAHRW 349
K++EE+F+EFQ +GL S PFF +AHRW
Sbjct: 391 KISEEMFKEFQCSGLVSSLPFFMKAHRW 418
>gb|AAF79330.1|AC002304_23 F14J16.28 [Arabidopsis thaliana]
Length = 499
Score = 129 bits (324), Expect = 3e-29
Identities = 58/88 (65%), Positives = 75/88 (84%)
Frame = -2
Query: 612 IPVKGLSFKNSKVLSWAYCDSSKPNRSTTSERWVLHSTAEYAQDIIAQTGLKKPSDITLS 433
IPVKGLSFKNS++LSWA+C+S+KP RST SERW+LHST +YA +IA+TGL+K S TL+
Sbjct: 412 IPVKGLSFKNSEILSWAHCESTKPGRSTDSERWILHSTPDYANSVIAKTGLQKLSSETLN 471
Query: 432 KVAEELFQEFQNTGLNISQPFFKRAHRW 349
K++EE+F+EFQ +GL S PFF +AHRW
Sbjct: 472 KISEEMFKEFQCSGLVSSLPFFMKAHRW 499
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 548,430,774
Number of Sequences: 1393205
Number of extensions: 11699765
Number of successful extensions: 26151
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 25480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26120
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25017613016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
