Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014107A_C01 KMC014107A_c01
(744 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF36520.1|AF131232_1 MAR-binding protein MFP1 homolog [Nicot... 87 3e-16
sp|Q9M7J4|MFP1_TOBAC MAR binding filament-like protein 1-1 gi|71... 86 7e-16
sp|P93203|MFP1_LYCES MAR binding filament-like protein 1 gi|7489... 81 2e-14
sp|Q9LW85|MFP1_ARATH MAR binding filament-like protein 1 gi|9294... 67 3e-10
ref|NP_188221.1| myosin heavy chain-like protein; protein id: At... 67 3e-10
>gb|AAF36520.1|AF131232_1 MAR-binding protein MFP1 homolog [Nicotiana tabacum]
Length = 398
Score = 86.7 bits (213), Expect = 3e-16
Identities = 53/104 (50%), Positives = 66/104 (62%), Gaps = 1/104 (0%)
Frame = -3
Query: 742 EDAHNLIMRLGKERETLDSRGKKLEEELASAKGEILRLRSQINSSKVAVSNEKPLNNEKV 563
EDAH+L+M+LGKERE+L+ R KKLE+E+ASAKGEILRLR+Q+NS K V+ E EKV
Sbjct: 315 EDAHSLVMKLGKERESLEKRAKKLEDEMASAKGEILRLRTQVNSVKAPVNKE-----EKV 369
Query: 562 QKDEGETKVNTEKVQKDEGETKLTVTA-RTTGRRRKANPPSYRE 434
+ E K TVT RTT RR+ A P S +E
Sbjct: 370 EAGE-----------------KATVTVKRTTRRRKTATPASQQE 396
>sp|Q9M7J4|MFP1_TOBAC MAR binding filament-like protein 1-1
gi|7108715|gb|AAF36519.1|AF131231_1 MAR-binding protein
MFP1 homolog [Nicotiana tabacum]
Length = 722
Score = 85.5 bits (210), Expect = 7e-16
Identities = 49/103 (47%), Positives = 65/103 (62%)
Frame = -3
Query: 742 EDAHNLIMRLGKERETLDSRGKKLEEELASAKGEILRLRSQINSSKVAVSNEKPLNNEKV 563
EDAH+L+M+LGKERE+L+ R KKLE+E+ASAKGEILRLR+Q+NS K V+NE EKV
Sbjct: 639 EDAHSLVMKLGKERESLEKRAKKLEDEMASAKGEILRLRTQVNSVKAPVNNE-----EKV 693
Query: 562 QKDEGETKVNTEKVQKDEGETKLTVTARTTGRRRKANPPSYRE 434
+ E K VT + T RR+ A P+ ++
Sbjct: 694 EAGE-----------------KAAVTVKRTRRRKTATQPASQQ 719
>sp|P93203|MFP1_LYCES MAR binding filament-like protein 1 gi|7489035|pir||T07111 MAR
binding filament-like protein 1 - tomato
gi|1771158|emb|CAA69181.1| MFP1 protein [Lycopersicon
esculentum]
Length = 697
Score = 80.9 bits (198), Expect = 2e-14
Identities = 45/73 (61%), Positives = 56/73 (76%)
Frame = -3
Query: 742 EDAHNLIMRLGKERETLDSRGKKLEEELASAKGEILRLRSQINSSKVAVSNEKPLNNEKV 563
EDAH+L+M+LGKERE+L+ R KKLE+E+A+AKGEILRLRSQINS K V +E EKV
Sbjct: 631 EDAHSLVMKLGKERESLEKRAKKLEDEMAAAKGEILRLRSQINSVKAPVEDE-----EKV 685
Query: 562 QKDEGETKVNTEK 524
E E KVN ++
Sbjct: 686 VAGEKE-KVNVQQ 697
>sp|Q9LW85|MFP1_ARATH MAR binding filament-like protein 1 gi|9294447|dbj|BAB02666.1|
MAR-binding protein MFP1 [Arabidopsis thaliana]
Length = 727
Score = 66.6 bits (161), Expect = 3e-10
Identities = 37/74 (50%), Positives = 48/74 (64%)
Frame = -3
Query: 742 EDAHNLIMRLGKERETLDSRGKKLEEELASAKGEILRLRSQINSSKVAVSNEKPLNNEKV 563
EDAH L+M LGKERE L+ + KKLEE+L SAKGEILR+RSQ +S K S +
Sbjct: 652 EDAHILVMSLGKEREVLEKKVKKLEEDLGSAKGEILRMRSQPDSVKAVNSTD-------- 703
Query: 562 QKDEGETKVNTEKV 521
K++ + V +KV
Sbjct: 704 NKEKSDNTVTVKKV 717
>ref|NP_188221.1| myosin heavy chain-like protein; protein id: At3g16000.1
[Arabidopsis thaliana]
Length = 724
Score = 66.6 bits (161), Expect = 3e-10
Identities = 37/74 (50%), Positives = 48/74 (64%)
Frame = -3
Query: 742 EDAHNLIMRLGKERETLDSRGKKLEEELASAKGEILRLRSQINSSKVAVSNEKPLNNEKV 563
EDAH L+M LGKERE L+ + KKLEE+L SAKGEILR+RSQ +S K S +
Sbjct: 649 EDAHILVMSLGKEREVLEKKVKKLEEDLGSAKGEILRMRSQPDSVKAVNSTD-------- 700
Query: 562 QKDEGETKVNTEKV 521
K++ + V +KV
Sbjct: 701 NKEKSDNTVTVKKV 714
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 593,988,744
Number of Sequences: 1393205
Number of extensions: 12185194
Number of successful extensions: 34847
Number of sequences better than 10.0: 153
Number of HSP's better than 10.0 without gapping: 32315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34654
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 35751090169
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
