Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014099A_C01 KMC014099A_c01
(557 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568346.1| tubulin family; protein id: At5g17410.1, suppor... 141 6e-33
pir||T51578 spindle pole body protein-like - Arabidopsis thalian... 141 6e-33
emb|CAD41489.1| OSJNBa0029H02.5 [Oryza sativa (japonica cultivar... 120 9e-27
ref|NP_006650.1| tubulin, gamma complex associated protein 2; ga... 42 0.004
ref|NP_596044.1| putative spindle pole body associated protein [... 42 0.005
>ref|NP_568346.1| tubulin family; protein id: At5g17410.1, supported by cDNA:
gi_13430651 [Arabidopsis thaliana]
gi|13430652|gb|AAK25948.1|AF360238_1 putative spindle
pole body protein [Arabidopsis thaliana]
gi|14532826|gb|AAK64095.1| putative spindle pole body
protein [Arabidopsis thaliana]
Length = 678
Score = 141 bits (355), Expect = 6e-33
Identities = 72/122 (59%), Positives = 85/122 (69%)
Frame = -2
Query: 556 DFFLDKCLRECLLLLPELLKKVERLKSMCLQYAAATQWLISSSIVLHSPEEPNDDSVRSK 377
DFFLDKCLR CLLLLP++LKK+E+LKS+CLQYAAATQWLISSSI ++S P +R
Sbjct: 572 DFFLDKCLRGCLLLLPDVLKKMEKLKSVCLQYAAATQWLISSSIDINSQSHPQKTMIRD- 630
Query: 376 QRKSGQILKSTTNHAAVTDSVLKFEKEFNAELQSLGSVLSSSSHAEPYLAHLAPWILGVK 197
VT+S+ FE+EFN+ELQSLG VLS S AEPYL HL+ WILGV
Sbjct: 631 --------------TTVTESIFNFEREFNSELQSLGPVLSKGSQAEPYLTHLSQWILGVS 676
Query: 196 HE 191
E
Sbjct: 677 KE 678
>pir||T51578 spindle pole body protein-like - Arabidopsis thaliana
gi|9755764|emb|CAC01736.1| spindle pole body
protein-like [Arabidopsis thaliana]
Length = 683
Score = 141 bits (355), Expect = 6e-33
Identities = 72/122 (59%), Positives = 85/122 (69%)
Frame = -2
Query: 556 DFFLDKCLRECLLLLPELLKKVERLKSMCLQYAAATQWLISSSIVLHSPEEPNDDSVRSK 377
DFFLDKCLR CLLLLP++LKK+E+LKS+CLQYAAATQWLISSSI ++S P +R
Sbjct: 577 DFFLDKCLRGCLLLLPDVLKKMEKLKSVCLQYAAATQWLISSSIDINSQSHPQKTMIRD- 635
Query: 376 QRKSGQILKSTTNHAAVTDSVLKFEKEFNAELQSLGSVLSSSSHAEPYLAHLAPWILGVK 197
VT+S+ FE+EFN+ELQSLG VLS S AEPYL HL+ WILGV
Sbjct: 636 --------------TTVTESIFNFEREFNSELQSLGPVLSKGSQAEPYLTHLSQWILGVS 681
Query: 196 HE 191
E
Sbjct: 682 KE 683
>emb|CAD41489.1| OSJNBa0029H02.5 [Oryza sativa (japonica cultivar-group)]
Length = 690
Score = 120 bits (302), Expect = 9e-27
Identities = 66/122 (54%), Positives = 83/122 (67%), Gaps = 3/122 (2%)
Frame = -2
Query: 556 DFFLDKCLRECLLLLPELLKKVERLKSMCLQYAAATQWLISSSIVLHSPEEPNDDSVRSK 377
DFFL KCL+ECLLLLPELL K+E+LK++CLQYA + Q LI S V RSK
Sbjct: 565 DFFLQKCLKECLLLLPELLVKIEKLKALCLQYATSIQLLIPSIDVAKPENTSKSRMPRSK 624
Query: 376 QRKS---GQILKSTTNHAAVTDSVLKFEKEFNAELQSLGSVLSSSSHAEPYLAHLAPWIL 206
+++ GQ LK + + +++S+LKFE EFN+ELQSL LS+SS AEPYL HL IL
Sbjct: 625 IKETKNRGQQLKLASENVVMSESILKFEAEFNSELQSLIPTLSNSSQAEPYLTHLGQCIL 684
Query: 205 GV 200
GV
Sbjct: 685 GV 686
>ref|NP_006650.1| tubulin, gamma complex associated protein 2; gamma-tubulin complex
protein 2 [Homo sapiens] gi|21450889|sp|Q9BSJ2|GCP2_HUMAN
Gamma-tubulin complex component 2 (GCP-2) (Spindle pole
body protein Spc97 homolog) (hSpc97) (hGCP2) (h103p)
gi|2801701|gb|AAC39728.1| spindle pole body protein spc97
homolog GCP2 [Homo sapiens]
Length = 902
Score = 42.4 bits (98), Expect = 0.004
Identities = 34/119 (28%), Positives = 53/119 (43%), Gaps = 15/119 (12%)
Frame = -2
Query: 550 FLDKCLRECLLLLPELLKKVERLKSMCLQYAAATQWLISS--------------SIVLHS 413
FLD CL++C+L PELLK +L S+C+ + Q S S VL
Sbjct: 729 FLDTCLKDCMLTNPELLKVFSKLMSVCVMFTNCMQKFTQSMKLDGELGGQTLEHSTVLGL 788
Query: 412 PEEPNDDSVRSKQRKSGQILKSTTNHAAVTDSVL-KFEKEFNAELQSLGSVLSSSSHAE 239
P + + + RK T + ++ + KF+K F+A L L + LS S ++
Sbjct: 789 PAGAEERARKELARKHLAEHADTVQLVSGFEATINKFDKNFSAHLLDLLARLSIYSTSD 847
>ref|NP_596044.1| putative spindle pole body associated protein [Schizosaccharomyces
pombe] gi|18203637|sp|Q9Y705|ALP4_SCHPO Spindle pole
body component alp4 (Altered polarity protein 4)
gi|11359277|pir||T43510 probable spindle pole body
associated protein alp4 - fission yeast
(Schizosaccharomyces pombe) gi|4757365|dbj|BAA77269.1|
Alp4 [Schizosaccharomyces pombe]
gi|5051488|emb|CAB44767.1| putative spindle pole body
associated protein [Schizosaccharomyces pombe]
Length = 784
Score = 42.0 bits (97), Expect = 0.005
Identities = 28/93 (30%), Positives = 44/93 (47%)
Frame = -2
Query: 550 FLDKCLRECLLLLPELLKKVERLKSMCLQYAAATQWLISSSIVLHSPEEPNDDSVRSKQR 371
FLD CL+EC+L LLK +L + C +A+ T S +L + EE D+ +
Sbjct: 684 FLDTCLKECMLTNSRLLKVQSKLLNTCAMFASYTSTFTRSLYLLENSEESFDE---GRMD 740
Query: 370 KSGQILKSTTNHAAVTDSVLKFEKEFNAELQSL 272
K +IL+ ++E F+ L+SL
Sbjct: 741 KMEEILR-------------RYEDSFSRHLKSL 760
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 472,144,348
Number of Sequences: 1393205
Number of extensions: 9489054
Number of successful extensions: 21426
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 20923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21421
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
