Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014082A_C01 KMC014082A_c01
(589 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK21344.1|AC024594_8 unknown protein [Oryza sativa (japonica... 103 2e-21
ref|NP_180399.1| unknown protein; protein id: At2g28320.1 [Arabi... 100 2e-20
ref|NP_191040.1| putative protein; protein id: At3g54800.1 [Arab... 92 4e-18
dbj|BAC42639.1| unknown protein [Arabidopsis thaliana] gi|290289... 92 4e-18
ref|NP_199369.2| putative protein; protein id: At5g45560.1, supp... 69 6e-11
>gb|AAK21344.1|AC024594_8 unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 773
Score = 103 bits (256), Expect = 2e-21
Identities = 49/65 (75%), Positives = 62/65 (95%)
Frame = -3
Query: 482 QLGIDIGSSTVARAVVSLVLGYLNHLVIEMAFVIQGHTREELPEFLLGTCRLHHLDASQS 303
+LG+DIGSSTVAR VVSLVLGYLN+LVIEMAF++QG+T+EELPEFLLGTCRL++LDAS++
Sbjct: 708 ELGVDIGSSTVARGVVSLVLGYLNNLVIEMAFLVQGNTQEELPEFLLGTCRLNYLDASKA 767
Query: 302 VLLKQ 288
V + +
Sbjct: 768 VSIDE 772
>ref|NP_180399.1| unknown protein; protein id: At2g28320.1 [Arabidopsis thaliana]
gi|25407975|pir||D84683 hypothetical protein At2g28320
[imported] - Arabidopsis thaliana
gi|4432844|gb|AAD20693.1| unknown protein [Arabidopsis
thaliana]
Length = 446
Score = 100 bits (248), Expect = 2e-20
Identities = 50/78 (64%), Positives = 62/78 (79%)
Frame = -3
Query: 533 LISSFHVILILKSRHPFQLGIDIGSSTVARAVVSLVLGYLNHLVIEMAFVIQGHTREELP 354
LI I + ++ +LG+DIGSSTVAR VVSLVLGYLN LVIEMAF+IQ +T EELP
Sbjct: 365 LIGQALEINYFRGKNYIELGVDIGSSTVARGVVSLVLGYLNKLVIEMAFLIQANTEEELP 424
Query: 353 EFLLGTCRLHHLDASQSV 300
E+LLGTCR +HLDAS+++
Sbjct: 425 EYLLGTCRFNHLDASKAI 442
>ref|NP_191040.1| putative protein; protein id: At3g54800.1 [Arabidopsis thaliana]
gi|11358377|pir||T47639 hypothetical protein T5N23.160 -
Arabidopsis thaliana gi|7258384|emb|CAB77600.1| putative
protein [Arabidopsis thaliana]
Length = 709
Score = 92.4 bits (228), Expect = 4e-18
Identities = 46/78 (58%), Positives = 60/78 (75%)
Frame = -3
Query: 533 LISSFHVILILKSRHPFQLGIDIGSSTVARAVVSLVLGYLNHLVIEMAFVIQGHTREELP 354
L+ + + ++ +L ID+GSSTVAR V +LVLGYLN+LVIEMAF+IQ +T EELP
Sbjct: 629 LVGQVLEVCYTRGKNYLELDIDVGSSTVARGVTNLVLGYLNNLVIEMAFLIQANTVEELP 688
Query: 353 EFLLGTCRLHHLDASQSV 300
E LLGTCRL++LD S+SV
Sbjct: 689 ELLLGTCRLNYLDVSKSV 706
>dbj|BAC42639.1| unknown protein [Arabidopsis thaliana] gi|29028904|gb|AAO64831.1|
At3g54800 [Arabidopsis thaliana]
Length = 733
Score = 92.4 bits (228), Expect = 4e-18
Identities = 46/78 (58%), Positives = 60/78 (75%)
Frame = -3
Query: 533 LISSFHVILILKSRHPFQLGIDIGSSTVARAVVSLVLGYLNHLVIEMAFVIQGHTREELP 354
L+ + + ++ +L ID+GSSTVAR V +LVLGYLN+LVIEMAF+IQ +T EELP
Sbjct: 653 LVGQVLEVCYTRGKNYLELDIDVGSSTVARGVTNLVLGYLNNLVIEMAFLIQANTVEELP 712
Query: 353 EFLLGTCRLHHLDASQSV 300
E LLGTCRL++LD S+SV
Sbjct: 713 ELLLGTCRLNYLDVSKSV 730
>ref|NP_199369.2| putative protein; protein id: At5g45560.1, supported by cDNA:
gi_18086358 [Arabidopsis thaliana]
gi|18086359|gb|AAL57642.1| AT5g45560/MFC19_23
[Arabidopsis thaliana]
Length = 719
Score = 68.6 bits (166), Expect = 6e-11
Identities = 30/62 (48%), Positives = 47/62 (75%)
Frame = -3
Query: 482 QLGIDIGSSTVARAVVSLVLGYLNHLVIEMAFVIQGHTREELPEFLLGTCRLHHLDASQS 303
++ +DIGSSTVA V+ LV+G + LV+EMAF++Q +T EELPE L+G R+ H++ S +
Sbjct: 652 EIDVDIGSSTVANGVLGLVIGVITSLVVEMAFLVQANTPEELPERLIGAVRVSHVELSSA 711
Query: 302 VL 297
++
Sbjct: 712 IV 713
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 515,285,684
Number of Sequences: 1393205
Number of extensions: 10955590
Number of successful extensions: 24428
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 23861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24425
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
