Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014079A_C01 KMC014079A_c01
(493 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM61107.1| nitrate transporter [Arabidopsis thaliana] 80 9e-15
ref|NP_188804.1| nitrate transporter; protein id: At3g21670.1, s... 80 9e-15
pir||T52585 probable nitrate transporter ntp3 [imported] - Arabi... 80 9e-15
emb|CAD41034.1| OSJNBa0060P14.5 [Oryza sativa (japonica cultivar... 66 2e-10
dbj|BAC56914.1| nitrate transporter [Nicotiana tabacum] 59 3e-08
>gb|AAM61107.1| nitrate transporter [Arabidopsis thaliana]
Length = 590
Score = 80.5 bits (197), Expect = 9e-15
Identities = 37/69 (53%), Positives = 53/69 (76%), Gaps = 3/69 (4%)
Frame = -2
Query: 492 LLVSIVDKVSQKKWLKSHLNQGRVDYFYWLLAALGILNFILFIVLARRHQYQ---VQHHL 322
LLVS+VD+V+ K WL+S+LN+ R++YFYWLL LG LNF++FIV A +HQY+ + +
Sbjct: 507 LLVSLVDRVTDKSWLRSNLNKARLNYFYWLLVVLGALNFLIFIVFAMKHQYKADVITVVV 566
Query: 321 EPEDSVDKE 295
+DSV+KE
Sbjct: 567 TDDDSVEKE 575
>ref|NP_188804.1| nitrate transporter; protein id: At3g21670.1, supported by cDNA:
111089., supported by cDNA: gi_13937208 [Arabidopsis
thaliana] gi|11994403|dbj|BAB02362.1| nitrate
transporter [Arabidopsis thaliana]
gi|13937209|gb|AAK50097.1|AF372959_1 AT3g21670/MIL23_23
[Arabidopsis thaliana] gi|23506051|gb|AAN28885.1|
At3g21670/MIL23_23 [Arabidopsis thaliana]
Length = 590
Score = 80.5 bits (197), Expect = 9e-15
Identities = 37/69 (53%), Positives = 53/69 (76%), Gaps = 3/69 (4%)
Frame = -2
Query: 492 LLVSIVDKVSQKKWLKSHLNQGRVDYFYWLLAALGILNFILFIVLARRHQYQ---VQHHL 322
LLVS+VD+V+ K WL+S+LN+ R++YFYWLL LG LNF++FIV A +HQY+ + +
Sbjct: 507 LLVSLVDRVTDKSWLRSNLNKARLNYFYWLLVVLGALNFLIFIVFAMKHQYKADVITVVV 566
Query: 321 EPEDSVDKE 295
+DSV+KE
Sbjct: 567 TDDDSVEKE 575
>pir||T52585 probable nitrate transporter ntp3 [imported] - Arabidopsis thaliana
(fragment) gi|4490323|emb|CAB38706.1| nitrate
transporter [Arabidopsis thaliana]
Length = 567
Score = 80.5 bits (197), Expect = 9e-15
Identities = 37/69 (53%), Positives = 53/69 (76%), Gaps = 3/69 (4%)
Frame = -2
Query: 492 LLVSIVDKVSQKKWLKSHLNQGRVDYFYWLLAALGILNFILFIVLARRHQYQ---VQHHL 322
LLVS+VD+V+ K WL+S+LN+ R++YFYWLL LG LNF++FIV A +HQY+ + +
Sbjct: 484 LLVSLVDRVTDKSWLRSNLNKARLNYFYWLLVVLGALNFLIFIVFAMKHQYKADVITVVV 543
Query: 321 EPEDSVDKE 295
+DSV+KE
Sbjct: 544 TDDDSVEKE 552
>emb|CAD41034.1| OSJNBa0060P14.5 [Oryza sativa (japonica cultivar-group)]
Length = 592
Score = 65.9 bits (159), Expect = 2e-10
Identities = 28/52 (53%), Positives = 38/52 (72%)
Frame = -2
Query: 492 LLVSIVDKVSQKKWLKSHLNQGRVDYFYWLLAALGILNFILFIVLARRHQYQ 337
LLVS VD ++ W++ L+ GR+D FYW+LAALG+ NF F+V A RHQY+
Sbjct: 512 LLVSAVDAATRGAWIRDGLDDGRLDLFYWMLAALGVANFAAFLVFASRHQYR 563
>dbj|BAC56914.1| nitrate transporter [Nicotiana tabacum]
Length = 590
Score = 58.9 bits (141), Expect = 3e-08
Identities = 31/67 (46%), Positives = 46/67 (68%), Gaps = 5/67 (7%)
Frame = -2
Query: 492 LLVSIVDKVSQKK-WLKSHLNQGRVDYFYWLLAALGILNFILFIVLARRHQYQ----VQH 328
+LV+IV KV+ K WL +LNQGR+ FYWLLA L +LN ++F+ ++RR+ Y+ +
Sbjct: 519 ILVTIVHKVTGKNPWLADNLNQGRLYDFYWLLATLSVLNLMIFLFISRRYVYKEKRLAEC 578
Query: 327 HLEPEDS 307
+E EDS
Sbjct: 579 GIEMEDS 585
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 413,467,984
Number of Sequences: 1393205
Number of extensions: 8562805
Number of successful extensions: 20027
Number of sequences better than 10.0: 147
Number of HSP's better than 10.0 without gapping: 19522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20011
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14203329973
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
