Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014078A_C01 KMC014078A_c01
(545 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_473340.1| hypothetical protein [Plasmodium falciparum 3D7... 31 8.5
ref|XP_241320.1| hypothetical protein XP_241320 [Rattus norvegicus] 31 8.5
>ref|NP_473340.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|4493987|emb|CAB39046.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1542
Score = 31.2 bits (69), Expect = 8.5
Identities = 19/54 (35%), Positives = 27/54 (49%), Gaps = 8/54 (14%)
Frame = +1
Query: 37 LSASSNSYMHLPTCFK--------ERCAHRCVSILKSKSKTEKGGAKQRRINKK 174
LS+SSNS + C + + + ++KSK EK G +RRINKK
Sbjct: 330 LSSSSNSPLSSSVCSNVSNFSDNLNKSVNDQMGLIKSKGDDEKSGRGERRINKK 383
>ref|XP_241320.1| hypothetical protein XP_241320 [Rattus norvegicus]
Length = 532
Score = 31.2 bits (69), Expect = 8.5
Identities = 25/96 (26%), Positives = 44/96 (45%)
Frame = +2
Query: 98 IDVSQFSNQNQKQKKVEPNREE*IKKKQVNLGSSSLLQSPHCHKYEVANFSKLQASL*QT 277
+D S+ N K K+ PN E KK+VN S + LQ + + + N ++
Sbjct: 297 LDHSETGNGWIKVKQWSPNTEH---KKKVNKFSRTRLQRAYLGSFVLVNL--------KS 345
Query: 278 KYLQCLFFRCKGET*RSENNYLLTIFKLACSVTCLD 385
Y + CK + +S+++ F++ CS + LD
Sbjct: 346 DYQPIILLICKRKAEKSKSHLRSAPFQVTCSHSTLD 381
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 452,752,407
Number of Sequences: 1393205
Number of extensions: 9024186
Number of successful extensions: 20245
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20230
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
