Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014074A_C01 KMC014074A_c01
(552 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568256.1| putative protein; protein id: At5g11980.1, supp... 183 1e-45
gb|AAM63487.1| unknown [Arabidopsis thaliana] 183 1e-45
pir||T48557 hypothetical protein F14F18.150 - Arabidopsis thalia... 171 7e-42
dbj|BAC33630.1| unnamed protein product [Mus musculus] gi|263406... 62 5e-09
ref|NP_631975.2| component of oligomeric golgi complex 8; conser... 62 5e-09
>ref|NP_568256.1| putative protein; protein id: At5g11980.1, supported by cDNA:
25365. [Arabidopsis thaliana] gi|27754564|gb|AAO22729.1|
unknown protein [Arabidopsis thaliana]
gi|28393871|gb|AAO42343.1| unknown protein [Arabidopsis
thaliana]
Length = 569
Score = 183 bits (465), Expect = 1e-45
Identities = 93/105 (88%), Positives = 99/105 (93%)
Frame = +3
Query: 234 LPLASDSQQPYVSELLSFTLDRLHKEPELLRVDGERIRRQMQEVAIGNYRSFIAAADALL 413
L LAS +QQPYVSELLSFTLDRLHKEPELLRVD ERI+RQMQEVA+GNYR+FI AADALL
Sbjct: 18 LSLASATQQPYVSELLSFTLDRLHKEPELLRVDAERIQRQMQEVAVGNYRAFITAADALL 77
Query: 414 AIRQEVSSIDNHLESLINEIPKLTSGCTEFIESAENILEKRKMNQ 548
AIRQEVSSID HLESLI E+PKLTSGCTEFI+SAENILEKRKMNQ
Sbjct: 78 AIRQEVSSIDKHLESLIGEVPKLTSGCTEFIDSAENILEKRKMNQ 122
>gb|AAM63487.1| unknown [Arabidopsis thaliana]
Length = 569
Score = 183 bits (465), Expect = 1e-45
Identities = 93/105 (88%), Positives = 99/105 (93%)
Frame = +3
Query: 234 LPLASDSQQPYVSELLSFTLDRLHKEPELLRVDGERIRRQMQEVAIGNYRSFIAAADALL 413
L LAS +QQPYVSELLSFTLDRLHKEPELLRVD ERI+RQMQEVA+GNYR+FI AADALL
Sbjct: 18 LSLASATQQPYVSELLSFTLDRLHKEPELLRVDAERIQRQMQEVAVGNYRAFITAADALL 77
Query: 414 AIRQEVSSIDNHLESLINEIPKLTSGCTEFIESAENILEKRKMNQ 548
AIRQEVSSID HLESLI E+PKLTSGCTEFI+SAENILEKRKMNQ
Sbjct: 78 AIRQEVSSIDKHLESLIGEVPKLTSGCTEFIDSAENILEKRKMNQ 122
>pir||T48557 hypothetical protein F14F18.150 - Arabidopsis thaliana
gi|7573365|emb|CAB87671.1| putative protein [Arabidopsis
thaliana]
Length = 619
Score = 171 bits (432), Expect = 7e-42
Identities = 93/127 (73%), Positives = 99/127 (77%), Gaps = 22/127 (17%)
Frame = +3
Query: 234 LPLASDSQQPYVSELLSFTLDRLHKEPELLRVDGERIRRQMQEVAIGNYRSFIAAADALL 413
L LAS +QQPYVSELLSFTLDRLHKEPELLRVD ERI+RQMQEVA+GNYR+FI AADALL
Sbjct: 18 LSLASATQQPYVSELLSFTLDRLHKEPELLRVDAERIQRQMQEVAVGNYRAFITAADALL 77
Query: 414 AIRQEVSSIDNHLESL----------------------INEIPKLTSGCTEFIESAENIL 527
AIRQEVSSID HLESL I E+PKLTSGCTEFI+SAENIL
Sbjct: 78 AIRQEVSSIDKHLESLILKLVEVGGVRGIVFGAFNSFGIGEVPKLTSGCTEFIDSAENIL 137
Query: 528 EKRKMNQ 548
EKRKMNQ
Sbjct: 138 EKRKMNQ 144
>dbj|BAC33630.1| unnamed protein product [Mus musculus] gi|26340690|dbj|BAC34007.1|
unnamed protein product [Mus musculus]
gi|26350743|dbj|BAC39008.1| unnamed protein product [Mus
musculus]
Length = 640
Score = 62.0 bits (149), Expect = 5e-09
Identities = 30/94 (31%), Positives = 51/94 (53%)
Frame = +3
Query: 264 YVSELLSFTLDRLHKEPELLRVDGERIRRQMQEVAIGNYRSFIAAADALLAIRQEVSSID 443
Y+ EL LDRL +EPE L + + +Q +++A NY++FI A+ I + ++
Sbjct: 55 YLRELSGSGLDRLRREPERLAEERAQRLQQTRDLAFANYKTFIRGAECTERIHRLFGDVE 114
Query: 444 NHLESLINEIPKLTSGCTEFIESAENILEKRKMN 545
L L++ +P+ C F++ AE I R+MN
Sbjct: 115 ASLGRLLDRLPRFQQSCRNFVKEAEEISSSRRMN 148
>ref|NP_631975.2| component of oligomeric golgi complex 8; conserved oligomeric Golgi
complex protein 8 [Mus musculus]
gi|22653700|sp|Q9JJA2|COG8_MOUSE Conserved oligomeric
Golgi complex component 8 gi|21320872|dbj|BAA95093.2|
Cog8 [Mus musculus]
Length = 640
Score = 62.0 bits (149), Expect = 5e-09
Identities = 30/94 (31%), Positives = 51/94 (53%)
Frame = +3
Query: 264 YVSELLSFTLDRLHKEPELLRVDGERIRRQMQEVAIGNYRSFIAAADALLAIRQEVSSID 443
Y+ EL LDRL +EPE L + + +Q +++A NY++FI A+ I + ++
Sbjct: 55 YLRELSGSGLDRLRREPERLAEERAQRLQQTRDLAFANYKTFIRGAECTERIHRLFGDVE 114
Query: 444 NHLESLINEIPKLTSGCTEFIESAENILEKRKMN 545
L L++ +P+ C F++ AE I R+MN
Sbjct: 115 ASLGRLLDRLPRFQQSCRNFVKEAEEISSSRRMN 148
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 493,130,904
Number of Sequences: 1393205
Number of extensions: 10828472
Number of successful extensions: 46110
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 44369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46055
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
