Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014070A_C01 KMC014070A_c01
(605 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC29936.1| unnamed protein product [Mus musculus] 34 1.7
dbj|BAB63599.1| P0403C05.21 [Oryza sativa (japonica cultivar-gro... 33 2.2
>dbj|BAC29936.1| unnamed protein product [Mus musculus]
Length = 757
Score = 33.9 bits (76), Expect = 1.7
Identities = 35/138 (25%), Positives = 58/138 (41%), Gaps = 3/138 (2%)
Frame = +3
Query: 171 PLKII*SNRVLQ---IP*LTSYQASPKPPASSGTTVNEDICQAVCISVQNSCMSEPQ*HM 341
PLKI + V++ +P S + PAS+ +T I IS +S P +
Sbjct: 108 PLKISSVSEVMKDSKLPVAQSQKTKGDTPASAASTGAAQI-----ISAAGDTLSVPAPAV 162
Query: 342 QPQMSILDRQCPNSSLNTWFTQLKSILFLCSPRQRKPEEEAKSQCHHMAARKINSQALCN 521
Q + +I +CPN++ ++ F S R+R PEE A ++ ++L
Sbjct: 163 QHEDTI-KTECPNTNEGKSTSETTEEAFSSSVRERPPEEVAARLAQQEKQEQVEMESLAK 221
Query: 522 ISHAYMNFECSI*NQCIT 575
+N S+ Q IT
Sbjct: 222 SLEDALNRTSSVTLQTIT 239
>dbj|BAB63599.1| P0403C05.21 [Oryza sativa (japonica cultivar-group)]
Length = 798
Score = 33.5 bits (75), Expect = 2.2
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = -2
Query: 448 FLCLGEHKNKMLFNWVNQVFKELLGHCRSSML--ICGCICYCGSLMQLFCTEIHTAWQMS 275
++ + ++ L W+ +K+L CR+ ++ + C+ GSL QL + H + S
Sbjct: 253 YMTMAISRHPSLKGWILLRYKKLCDSCRTDVVSEVSSCLNVLGSLTQLEDNKSHMGSESS 312
Query: 274 SLTVVPELAGGF 239
L + E +GG+
Sbjct: 313 VLDKIDENSGGY 324
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 498,566,796
Number of Sequences: 1393205
Number of extensions: 10392314
Number of successful extensions: 21822
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21789
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
