Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014068A_C01 KMC014068A_c01
(531 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG60133.1|AC073555_17 hypothetical protein [Arabidopsis thal... 216 1e-55
gb|AAM61146.1| unknown [Arabidopsis thaliana] 216 1e-55
ref|NP_564533.1| expressed protein; protein id: At1g48790.1, sup... 216 1e-55
dbj|BAB67981.1| B1088D01.3 [Oryza sativa (japonica cultivar-group)] 188 4e-47
dbj|BAC03345.1| B1111E11.23 [Oryza sativa (japonica cultivar-gro... 182 2e-45
>gb|AAG60133.1|AC073555_17 hypothetical protein [Arabidopsis thaliana]
Length = 505
Score = 216 bits (550), Expect = 1e-55
Identities = 97/112 (86%), Positives = 107/112 (94%)
Frame = -1
Query: 531 FEVQDKRSLFPLGWIHTHPTQSCFMSSIDLHTHYSYQIMLPESVAIVMAPQDSSRNHGIF 352
FEVQDK+SLFPLGWIHTHPTQSCFMSSID+HTHYSYQIMLPE+VAIVMAPQDSSRNHGIF
Sbjct: 394 FEVQDKQSLFPLGWIHTHPTQSCFMSSIDVHTHYSYQIMLPEAVAIVMAPQDSSRNHGIF 453
Query: 351 RLTTPGGMSVIKQCDQRGFHPHNQPPDGGPIYDTCTDVYMNPDLKFDVIDLR 196
RLTTPGGM+VI+ CD+RGFH H+ P DGGPIY+TC +VYMNP+LKFDVIDLR
Sbjct: 454 RLTTPGGMTVIRNCDRRGFHAHSSPEDGGPIYNTCKEVYMNPNLKFDVIDLR 505
>gb|AAM61146.1| unknown [Arabidopsis thaliana]
Length = 507
Score = 216 bits (550), Expect = 1e-55
Identities = 97/112 (86%), Positives = 107/112 (94%)
Frame = -1
Query: 531 FEVQDKRSLFPLGWIHTHPTQSCFMSSIDLHTHYSYQIMLPESVAIVMAPQDSSRNHGIF 352
FEVQDK+SLFPLGWIHTHPTQSCFMSSID+HTHYSYQIMLPE+VAIVMAPQDSSRNHGIF
Sbjct: 396 FEVQDKQSLFPLGWIHTHPTQSCFMSSIDVHTHYSYQIMLPEAVAIVMAPQDSSRNHGIF 455
Query: 351 RLTTPGGMSVIKQCDQRGFHPHNQPPDGGPIYDTCTDVYMNPDLKFDVIDLR 196
RLTTPGGM+VI+ CD+RGFH H+ P DGGPIY+TC +VYMNP+LKFDVIDLR
Sbjct: 456 RLTTPGGMTVIRNCDRRGFHAHSSPEDGGPIYNTCKEVYMNPNLKFDVIDLR 507
>ref|NP_564533.1| expressed protein; protein id: At1g48790.1, supported by cDNA:
112350., supported by cDNA: gi_18176375, supported by
cDNA: gi_20465516 [Arabidopsis thaliana]
gi|18176376|gb|AAL60033.1| unknown protein [Arabidopsis
thaliana] gi|20465517|gb|AAM20241.1| unknown protein
[Arabidopsis thaliana]
Length = 507
Score = 216 bits (550), Expect = 1e-55
Identities = 97/112 (86%), Positives = 107/112 (94%)
Frame = -1
Query: 531 FEVQDKRSLFPLGWIHTHPTQSCFMSSIDLHTHYSYQIMLPESVAIVMAPQDSSRNHGIF 352
FEVQDK+SLFPLGWIHTHPTQSCFMSSID+HTHYSYQIMLPE+VAIVMAPQDSSRNHGIF
Sbjct: 396 FEVQDKQSLFPLGWIHTHPTQSCFMSSIDVHTHYSYQIMLPEAVAIVMAPQDSSRNHGIF 455
Query: 351 RLTTPGGMSVIKQCDQRGFHPHNQPPDGGPIYDTCTDVYMNPDLKFDVIDLR 196
RLTTPGGM+VI+ CD+RGFH H+ P DGGPIY+TC +VYMNP+LKFDVIDLR
Sbjct: 456 RLTTPGGMTVIRNCDRRGFHAHSSPEDGGPIYNTCKEVYMNPNLKFDVIDLR 507
>dbj|BAB67981.1| B1088D01.3 [Oryza sativa (japonica cultivar-group)]
Length = 517
Score = 188 bits (477), Expect = 4e-47
Identities = 83/112 (74%), Positives = 94/112 (83%)
Frame = -1
Query: 531 FEVQDKRSLFPLGWIHTHPTQSCFMSSIDLHTHYSYQIMLPESVAIVMAPQDSSRNHGIF 352
F+VQDK SLF LGWIHTHPTQSCF+SSIDLH HYSYQ+MLPE++AIVMAP D+ R HGIF
Sbjct: 406 FDVQDKGSLFTLGWIHTHPTQSCFLSSIDLHNHYSYQVMLPEAIAIVMAPTDTRRKHGIF 465
Query: 351 RLTTPGGMSVIKQCDQRGFHPHNQPPDGGPIYDTCTDVYMNPDLKFDVIDLR 196
L+ PGGM VI C +RGFHPH P DG PIY+ C+ VYMNPD+KFDVIDLR
Sbjct: 466 HLSDPGGMGVIHDCPERGFHPHKAPLDGSPIYEHCSHVYMNPDVKFDVIDLR 517
>dbj|BAC03345.1| B1111E11.23 [Oryza sativa (japonica cultivar-group)]
Length = 541
Score = 182 bits (462), Expect = 2e-45
Identities = 79/112 (70%), Positives = 94/112 (83%)
Frame = -1
Query: 531 FEVQDKRSLFPLGWIHTHPTQSCFMSSIDLHTHYSYQIMLPESVAIVMAPQDSSRNHGIF 352
FEVQDK SLF LGWIHTHPTQ+CF+SSIDLH HYSYQ+MLPE++AIVMAP D++R HGIF
Sbjct: 428 FEVQDKGSLFTLGWIHTHPTQTCFLSSIDLHNHYSYQVMLPEAIAIVMAPTDTTRKHGIF 487
Query: 351 RLTTPGGMSVIKQCDQRGFHPHNQPPDGGPIYDTCTDVYMNPDLKFDVIDLR 196
LT PGGM VI C + GFHPH +P DG IY+ C+ VYMNP++KFD++DLR
Sbjct: 488 HLTDPGGMGVIHDCQESGFHPHEEPLDGTSIYEHCSHVYMNPNVKFDMVDLR 539
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 489,894,694
Number of Sequences: 1393205
Number of extensions: 10823708
Number of successful extensions: 21500
Number of sequences better than 10.0: 105
Number of HSP's better than 10.0 without gapping: 20959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21475
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
