Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014057A_C01 KMC014057A_c01
(735 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P19177|H2A_PETCR Histone H2A gi|100161|pir||S11498 histone H2... 261 9e-69
dbj|BAB44136.1| putative histone H2A [Oryza sativa (japonica cul... 258 5e-68
sp|P40280|H2A_MAIZE Histone H2A gi|7439704|pir||T02076 histone H... 252 3e-66
gb|AAF65769.1|AF242311_1 histone H2A [Euphorbia esula] 252 3e-66
sp|P25470|H2A1_PEA Histone H2A gi|81906|pir||JQ1183 histone H2A ... 242 5e-63
>sp|P19177|H2A_PETCR Histone H2A gi|100161|pir||S11498 histone H2A - parsley
gi|20448|emb|CAA37828.1| H2A histone protein (AA 1 -
149) [Petroselinum crispum]
Length = 149
Score = 261 bits (666), Expect = 9e-69
Identities = 135/149 (90%), Positives = 140/149 (93%)
Frame = +3
Query: 57 TTGKAKKGAGGRKIGGPKKKPVSRSIKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAA 236
T GKAKKG GGRK GGP+KK V+RS+KAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAA
Sbjct: 3 TAGKAKKGFGGRK-GGPRKKSVTRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAA 61
Query: 237 VLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINP 416
VLEYLAAEVLELAGNAARDNKK RIIPRH+LLAVRNDEELGKLLAGVT AHGGVLPNINP
Sbjct: 62 VLEYLAAEVLELAGNAARDNKKTRIIPRHLLLAVRNDEELGKLLAGVTFAHGGVLPNINP 121
Query: 417 VLLPKKTAEKVAKEPKSPAKKGVKSPKKA 503
VLLPKKTAEK AKEPKSP+K G KSPKKA
Sbjct: 122 VLLPKKTAEKAAKEPKSPSKAG-KSPKKA 149
>dbj|BAB44136.1| putative histone H2A [Oryza sativa (japonica cultivar-group)]
Length = 159
Score = 258 bits (660), Expect = 5e-68
Identities = 133/150 (88%), Positives = 137/150 (90%), Gaps = 3/150 (2%)
Frame = +3
Query: 63 GKAKKGAGGRKIGGPKKKPVSRSIKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVL 242
GK KKGA GRK GGP+KK VSRS+KAGLQFPVGRIGRYLKKGRYAQR+GTGAPVYLAAVL
Sbjct: 10 GKLKKGAAGRKAGGPRKKAVSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAAVL 69
Query: 243 EYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVL 422
EYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVLPNINPVL
Sbjct: 70 EYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVL 129
Query: 423 LPKKTAEKVA---KEPKSPAKKGVKSPKKA 503
LPKKTAEK A KE KSP K KSPKKA
Sbjct: 130 LPKKTAEKAAAAGKEAKSPKKAAGKSPKKA 159
>sp|P40280|H2A_MAIZE Histone H2A gi|7439704|pir||T02076 histone H2A - maize
gi|473603|gb|AAB04687.1| histone H2A
Length = 159
Score = 252 bits (644), Expect = 3e-66
Identities = 131/151 (86%), Positives = 136/151 (89%), Gaps = 4/151 (2%)
Frame = +3
Query: 63 GKAKKGAGGRKIGGPKKKPVSRSIKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVL 242
GK KKGA GRK+GGP+KK VSRS+KAGLQFPVGRIGRYLKKGRYAQ VGTGAPVYLAAVL
Sbjct: 10 GKGKKGAAGRKVGGPRKKSVSRSVKAGLQFPVGRIGRYLKKGRYAQXVGTGAPVYLAAVL 69
Query: 243 EYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVL 422
EYLAAEVLELAGNAARDNKK RIIPRHVLLA+RNDEELGKLL GVTIAHGGVLPNINPVL
Sbjct: 70 EYLAAEVLELAGNAARDNKKTRIIPRHVLLAIRNDEELGKLLGGVTIAHGGVLPNINPVL 129
Query: 423 LPKKTAEKV----AKEPKSPAKKGVKSPKKA 503
LPKKTAEK +KE KSP KK KSPKKA
Sbjct: 130 LPKKTAEKASSGGSKEAKSP-KKAAKSPKKA 159
>gb|AAF65769.1|AF242311_1 histone H2A [Euphorbia esula]
Length = 153
Score = 252 bits (644), Expect = 3e-66
Identities = 136/153 (88%), Positives = 139/153 (89%), Gaps = 4/153 (2%)
Frame = +3
Query: 57 TTGKAKKGAGGRKIGGPKKKPVSRSIKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAA 236
T K KKGAG RK GGPKKKPVSRS+KAGLQFPVGRIGR+LKKGRYAQRVG+GAPVYLAA
Sbjct: 3 TGAKLKKGAGERKGGGPKKKPVSRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPVYLAA 62
Query: 237 VLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINP 416
VLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINP
Sbjct: 63 VLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINP 122
Query: 417 VLLPKKTAEKVA----KEPKSPAKKGVKSPKKA 503
VLLPKK AEK A KEPKSPA K KSPKKA
Sbjct: 123 VLLPKK-AEKAAAAATKEPKSPA-KATKSPKKA 153
>sp|P25470|H2A1_PEA Histone H2A gi|81906|pir||JQ1183 histone H2A - garden pea
Length = 150
Score = 242 bits (617), Expect = 5e-63
Identities = 125/152 (82%), Positives = 136/152 (89%)
Frame = +3
Query: 48 MDTTTGKAKKGAGGRKIGGPKKKPVSRSIKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVY 227
MD +T K KKGAGGRK GGP+KK V+RS++AGLQFPVGR+GR+LKKGRYAQRVGTGAPVY
Sbjct: 1 MDAST-KTKKGAGGRKGGGPRKKSVTRSVRAGLQFPVGRVGRFLKKGRYAQRVGTGAPVY 59
Query: 228 LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 407
LAAVLEYLAAEVLELAGNAARDNKKNRI PRH+LLAVRNDEELGKLLAGVTIA+GGVLPN
Sbjct: 60 LAAVLEYLAAEVLELAGNAARDNKKNRISPRHLLLAVRNDEELGKLLAGVTIAYGGVLPN 119
Query: 408 INPVLLPKKTAEKVAKEPKSPAKKGVKSPKKA 503
INPVLLPK+ A PKSP+ K KSPKKA
Sbjct: 120 INPVLLPKRKENAAASTPKSPS-KAKKSPKKA 150
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 700,036,383
Number of Sequences: 1393205
Number of extensions: 17861658
Number of successful extensions: 184952
Number of sequences better than 10.0: 1320
Number of HSP's better than 10.0 without gapping: 68377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106917
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34906576228
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
