Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014036A_C01 KMC014036A_c01
(553 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB21600.1| CpsIbH [Streptococcus agalactiae] 34 1.3
ref|NP_701537.1| hypothetical protein [Plasmodium falciparum 3D7... 33 1.8
ref|NP_196001.1| putative protein; protein id: At5g03810.1 [Arab... 32 5.1
dbj|BAB08607.1| proline-rich protein APG-like [Arabidopsis thali... 32 5.1
ref|NP_190878.1| putative protein; protein id: At3g53100.1 [Arab... 32 6.7
>dbj|BAB21600.1| CpsIbH [Streptococcus agalactiae]
Length = 379
Score = 33.9 bits (76), Expect = 1.3
Identities = 17/74 (22%), Positives = 42/74 (55%)
Frame = -3
Query: 446 LLLSLVIMFQRGSIDQAPQVRPRNLSDVLFLKKKIAFWSSLNIYRCFQTPEPNRVVTAGK 267
LLL+L+++ S ++ +++ N++++ F+ + + S+ + F++PE +RV+ A
Sbjct: 5 LLLALIVLLICSSYNE--KMKFLNMAEIFFIVFYMVYLVSIVLNSLFRSPEFHRVIAAFN 62
Query: 266 QLVCAMAATSIFHY 225
L + + +HY
Sbjct: 63 SLAVGVVSLLFYHY 76
>ref|NP_701537.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496705|gb|AAN36261.1|AE014846_60 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 483
Score = 33.5 bits (75), Expect = 1.8
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 9/63 (14%)
Frame = +2
Query: 68 ISHNPVTFDCTIIT---CCKTLKCYSQRRLHLHTRLNNYYNIASN------MRTQQNLHN 220
IS+N + D T+I+ CKTLK ++ + +NN N++SN ++ N+HN
Sbjct: 186 ISNNIASQDNTLISNNISCKTLKLMEEKTSSIDGNMNNIKNMSSNENDIISLKENYNIHN 245
Query: 221 WDN 229
+N
Sbjct: 246 NEN 248
>ref|NP_196001.1| putative protein; protein id: At5g03810.1 [Arabidopsis thaliana]
gi|11280579|pir||T48408 hypothetical protein F8F6.20 -
Arabidopsis thaliana gi|7406391|emb|CAB85501.1| putative
protein [Arabidopsis thaliana]
Length = 320
Score = 32.0 bits (71), Expect = 5.1
Identities = 19/44 (43%), Positives = 25/44 (56%)
Frame = +1
Query: 220 LG*WKIEVAAMAHTSCLPAVTTLFGSGVWKQR*IFRLDQNAIFF 351
LG +I V + CLPA TLFG GV + RL+Q+A+ F
Sbjct: 175 LGARRIGVTTLPPLGCLPAAITLFG-GVGNNMCVERLNQDAVSF 217
>dbj|BAB08607.1| proline-rich protein APG-like [Arabidopsis thaliana]
Length = 353
Score = 32.0 bits (71), Expect = 5.1
Identities = 19/44 (43%), Positives = 25/44 (56%)
Frame = +1
Query: 220 LG*WKIEVAAMAHTSCLPAVTTLFGSGVWKQR*IFRLDQNAIFF 351
LG +I V + CLPA TLFG GV + RL+Q+A+ F
Sbjct: 208 LGARRIGVTTLPPLGCLPAAITLFG-GVGNNMCVERLNQDAVSF 250
>ref|NP_190878.1| putative protein; protein id: At3g53100.1 [Arabidopsis thaliana]
gi|11280580|pir||T46156 hypothetical protein T4D2.30 -
Arabidopsis thaliana gi|6630730|emb|CAB64213.1| putative
protein [Arabidopsis thaliana]
Length = 315
Score = 31.6 bits (70), Expect = 6.7
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Frame = +1
Query: 220 LG*WKIEVAAMAHTSCLPAVTTLFGSGVWKQR*IFRLDQNAIFF---FKNST---SERFL 381
LG +I V ++ CLPA TLFG+G + + RL+ +AI F +N+T R
Sbjct: 204 LGARRIGVISLPPMGCLPAAITLFGAG--NKSCVERLNNDAIMFNTKLENTTRLLMNRHS 261
Query: 382 GLTCGA*SIL-PLWNMITRLNNN 447
GL A ++ P ++IT +N
Sbjct: 262 GLRLVAFNVYQPFLDIITNPTDN 284
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 435,939,047
Number of Sequences: 1393205
Number of extensions: 8680831
Number of successful extensions: 17352
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 16875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17347
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
