Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013994A_C02 KMC013994A_c02
(582 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172488.1| hypothetical protein; protein id: At1g10170.1 [... 42 0.007
ref|NP_189011.2| bHLH protein; protein id: At3g23690.1, supporte... 42 0.007
gb|EAA28426.1| predicted protein [Neurospora crassa] 37 0.23
gb|AAM29589.1| RH35718p [Drosophila melanogaster] 36 0.40
ref|NP_572387.1| CG1677-PA [Drosophila melanogaster] gi|24640346... 36 0.40
>ref|NP_172488.1| hypothetical protein; protein id: At1g10170.1 [Arabidopsis thaliana]
gi|25402589|pir||D86236 protein F14N23.5 [imported] -
Arabidopsis thaliana gi|4914319|gb|AAD32867.1|AC005489_5
F14N23.5 [Arabidopsis thaliana]
Length = 1188
Score = 41.6 bits (96), Expect = 0.007
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Frame = -3
Query: 562 SANIQPSVLKKA---APITASLNRWNVLNQESSSSSSVTTGRAEVSGKQKESSAVSKSVS 392
S + Q S L+ A +PI S+NRW+VL + +S+S++ E + +ESS+
Sbjct: 1115 STDAQASALRSAKSNSPIVTSVNRWSVLEPKKASTSTL-----EPIAQIEESSS------ 1163
Query: 391 DAGGSNEEGKQHGDNSDAAEVPEVVDDWEKAYE 293
S GKQ + S EVVDDWEK E
Sbjct: 1164 ----SKTTGKQPVEGSG----EEVVDDWEKVCE 1188
>ref|NP_189011.2| bHLH protein; protein id: At3g23690.1, supported by cDNA:
gi_17529309, supported by cDNA: gi_20465452 [Arabidopsis
thaliana] gi|9293943|dbj|BAB01846.1| contains similarity
to DNA-binding protein~gene_id:MYM9.3 [Arabidopsis
thaliana] gi|17529310|gb|AAL38882.1| putative
DNA-binding protein [Arabidopsis thaliana]
gi|20465453|gb|AAM20186.1| putative DNA-binding protein
[Arabidopsis thaliana]
Length = 371
Score = 41.6 bits (96), Expect = 0.007
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Frame = -3
Query: 484 QESSSSSSVTTGRAEVSGKQKESSAVSKSVSDAGGSNEEGKQ----HGDNSDAAEVPEVV 317
+ES +SSS+T ++VSG+ S +S D GS++ G + GDN D A+ PE
Sbjct: 126 KESPASSSLTASNSKVSGENGGSKGGKRSKQDVAGSSKNGVEKCDSKGDNKDDAKPPEAP 185
Query: 316 DDW 308
D+
Sbjct: 186 KDY 188
>gb|EAA28426.1| predicted protein [Neurospora crassa]
Length = 471
Score = 36.6 bits (83), Expect = 0.23
Identities = 26/89 (29%), Positives = 43/89 (48%)
Frame = -3
Query: 568 TGSANIQPSVLKKAAPITASLNRWNVLNQESSSSSSVTTGRAEVSGKQKESSAVSKSVSD 389
+ S+ + K AAP T L R + ESSSSSS ++ S + + A + V++
Sbjct: 141 SSSSEDEAKKTKAAAPATNPLKRKAESSSESSSSSSDSSSSDSSSSEDEAPKAKKQKVAE 200
Query: 388 AGGSNEEGKQHGDNSDAAEVPEVVDDWEK 302
+ S+ E +SD++ E DD +K
Sbjct: 201 SSSSSSESSS-DSSSDSSSSSESEDDKKK 228
>gb|AAM29589.1| RH35718p [Drosophila melanogaster]
Length = 1000
Score = 35.8 bits (81), Expect = 0.40
Identities = 22/54 (40%), Positives = 32/54 (58%), Gaps = 1/54 (1%)
Frame = -3
Query: 478 SSSSSSVTTGRAEVSGKQKESSAVSK-SVSDAGGSNEEGKQHGDNSDAAEVPEV 320
SSS+SS ++ R+++S KQK+SS+ S S S +G S+ G D D EV
Sbjct: 62 SSSNSSSSSNRSDLSKKQKKSSSSSSGSGSGSGSSSSSGSSSEDEGDQEPEQEV 115
>ref|NP_572387.1| CG1677-PA [Drosophila melanogaster] gi|24640346|ref|NP_727178.1|
CG1677-PB [Drosophila melanogaster]
gi|22831886|gb|AAF46248.2| CG1677-PA [Drosophila
melanogaster] gi|22831887|gb|AAN09207.1| CG1677-PB
[Drosophila melanogaster]
Length = 1000
Score = 35.8 bits (81), Expect = 0.40
Identities = 22/54 (40%), Positives = 32/54 (58%), Gaps = 1/54 (1%)
Frame = -3
Query: 478 SSSSSSVTTGRAEVSGKQKESSAVSK-SVSDAGGSNEEGKQHGDNSDAAEVPEV 320
SSS+SS ++ R+++S KQK+SS+ S S S +G S+ G D D EV
Sbjct: 62 SSSNSSSSSNRSDLSKKQKKSSSSSSGSGSGSGSSSSSGSSSEDEGDQEPEQEV 115
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 466,255,633
Number of Sequences: 1393205
Number of extensions: 9547544
Number of successful extensions: 50469
Number of sequences better than 10.0: 107
Number of HSP's better than 10.0 without gapping: 45428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48556
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
