Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013988A_C01 KMC013988A_c01
(564 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567934.1| putative protein; protein id: At4g33680.1, supp... 110 1e-48
pir||T04985 probable transaminase (EC 2.6.1.-) T16L1.170 [simila... 110 1e-48
ref|NP_565359.1| putative aspartate aminotransferase; protein id... 108 3e-48
pir||A84511 probable aspartate aminotransferase [imported] - Ara... 108 3e-48
gb|AAN59772.1| Putative transaminase [Oryza sativa (japonica cul... 96 7e-42
>ref|NP_567934.1| putative protein; protein id: At4g33680.1, supported by cDNA:
gi_15912290, supported by cDNA: gi_17529043 [Arabidopsis
thaliana] gi|15912291|gb|AAL08279.1| AT4g33680/T16L1_170
[Arabidopsis thaliana] gi|17529044|gb|AAL38732.1|
unknown protein [Arabidopsis thaliana]
gi|21436149|gb|AAM51321.1| unknown protein [Arabidopsis
thaliana]
Length = 461
Score = 110 bits (276), Expect(2) = 1e-48
Identities = 51/81 (62%), Positives = 62/81 (75%)
Frame = -1
Query: 327 LVDTFESLALKVYGGRNAPYIWVHFPGLSSWDVFNEFLERAAIVIIPGHQDFGPGGKEYV 148
++DTF SL VYGG+NAPY+WVHFP SSWDVF E LE+ +V PG FGPGG+ +V
Sbjct: 380 IIDTFTSLGYDVYGGKNAPYVWVHFPNQSSWDVFAEILEKTHVVTTPG-SGFGPGGEGFV 438
Query: 147 RVSAFGHRECMLEASRRIRKL 85
RVSAFGHRE +LEA RR ++L
Sbjct: 439 RVSAFGHRENILEACRRFKQL 459
Score = 104 bits (259), Expect(2) = 1e-48
Identities = 47/79 (59%), Positives = 62/79 (77%)
Frame = -3
Query: 562 SFSKSAGFTGVRLGWTFVPEELRYANGYSVLKDYDRIVCTSFHGASNIVQAGGLACLSPE 383
SFSK AGFTGVRLGWT +P++L Y++G+ V KD++RI+CT F+GASNI QAG LACL+PE
Sbjct: 302 SFSKYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPE 361
Query: 382 GFKALTSTIHHYLEHAKIL 326
G +A+ I Y E+ I+
Sbjct: 362 GLEAMHKVIGFYKENTNII 380
>pir||T04985 probable transaminase (EC 2.6.1.-) T16L1.170 [similarity] -
Arabidopsis thaliana gi|3549670|emb|CAA20581.1| putative
protein [Arabidopsis thaliana]
gi|7270317|emb|CAB80085.1| putative protein [Arabidopsis
thaliana]
Length = 426
Score = 110 bits (276), Expect(2) = 1e-48
Identities = 51/81 (62%), Positives = 62/81 (75%)
Frame = -1
Query: 327 LVDTFESLALKVYGGRNAPYIWVHFPGLSSWDVFNEFLERAAIVIIPGHQDFGPGGKEYV 148
++DTF SL VYGG+NAPY+WVHFP SSWDVF E LE+ +V PG FGPGG+ +V
Sbjct: 345 IIDTFTSLGYDVYGGKNAPYVWVHFPNQSSWDVFAEILEKTHVVTTPG-SGFGPGGEGFV 403
Query: 147 RVSAFGHRECMLEASRRIRKL 85
RVSAFGHRE +LEA RR ++L
Sbjct: 404 RVSAFGHRENILEACRRFKQL 424
Score = 104 bits (259), Expect(2) = 1e-48
Identities = 47/79 (59%), Positives = 62/79 (77%)
Frame = -3
Query: 562 SFSKSAGFTGVRLGWTFVPEELRYANGYSVLKDYDRIVCTSFHGASNIVQAGGLACLSPE 383
SFSK AGFTGVRLGWT +P++L Y++G+ V KD++RI+CT F+GASNI QAG LACL+PE
Sbjct: 267 SFSKYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPE 326
Query: 382 GFKALTSTIHHYLEHAKIL 326
G +A+ I Y E+ I+
Sbjct: 327 GLEAMHKVIGFYKENTNII 345
>ref|NP_565359.1| putative aspartate aminotransferase; protein id: At2g13810.1,
supported by cDNA: gi_15982837 [Arabidopsis thaliana]
gi|15982838|gb|AAL09766.1| At2g13810/F13J11.16
[Arabidopsis thaliana] gi|20197607|gb|AAD15433.2|
putative aspartate aminotransferase [Arabidopsis
thaliana] gi|20197797|gb|AAM15253.1| putative aspartate
aminotransferase [Arabidopsis thaliana]
gi|23505955|gb|AAN28837.1| At2g13810/F13J11.16
[Arabidopsis thaliana]
Length = 456
Score = 108 bits (269), Expect(2) = 3e-48
Identities = 49/81 (60%), Positives = 62/81 (76%)
Frame = -1
Query: 333 KYLVDTFESLALKVYGGRNAPYIWVHFPGLSSWDVFNEFLERAAIVIIPGHQDFGPGGKE 154
K L+DT SL LKVYGG NAPY+WVHF G SWDVFNE LE I+ +PG FGPGG+E
Sbjct: 357 KILMDTLVSLGLKVYGGVNAPYLWVHFKGSKSWDVFNEILENTHIITVPG-SGFGPGGEE 415
Query: 153 YVRVSAFGHRECMLEASRRIR 91
Y+R+S FG R+ ++EAS+R++
Sbjct: 416 YLRISGFGRRDHIVEASKRLQ 436
Score = 105 bits (262), Expect(2) = 3e-48
Identities = 49/79 (62%), Positives = 62/79 (78%)
Frame = -3
Query: 562 SFSKSAGFTGVRLGWTFVPEELRYANGYSVLKDYDRIVCTSFHGASNIVQAGGLACLSPE 383
SFSK AGFTGVRLGW+ +P+EL Y+NG+ ++ D+ RIV TSF+GASNI QAGGLACLS
Sbjct: 281 SFSKFAGFTGVRLGWSIIPDELLYSNGFPIINDFHRIVTTSFNGASNIAQAGGLACLSSG 340
Query: 382 GFKALTSTIHHYLEHAKIL 326
G K + S ++Y E+ KIL
Sbjct: 341 GLKEIRSVNNYYKENRKIL 359
>pir||A84511 probable aspartate aminotransferase [imported] - Arabidopsis
thaliana
Length = 429
Score = 108 bits (269), Expect(2) = 3e-48
Identities = 49/81 (60%), Positives = 62/81 (76%)
Frame = -1
Query: 333 KYLVDTFESLALKVYGGRNAPYIWVHFPGLSSWDVFNEFLERAAIVIIPGHQDFGPGGKE 154
K L+DT SL LKVYGG NAPY+WVHF G SWDVFNE LE I+ +PG FGPGG+E
Sbjct: 330 KILMDTLVSLGLKVYGGVNAPYLWVHFKGSKSWDVFNEILENTHIITVPG-SGFGPGGEE 388
Query: 153 YVRVSAFGHRECMLEASRRIR 91
Y+R+S FG R+ ++EAS+R++
Sbjct: 389 YLRISGFGRRDHIVEASKRLQ 409
Score = 105 bits (262), Expect(2) = 3e-48
Identities = 49/79 (62%), Positives = 62/79 (78%)
Frame = -3
Query: 562 SFSKSAGFTGVRLGWTFVPEELRYANGYSVLKDYDRIVCTSFHGASNIVQAGGLACLSPE 383
SFSK AGFTGVRLGW+ +P+EL Y+NG+ ++ D+ RIV TSF+GASNI QAGGLACLS
Sbjct: 254 SFSKFAGFTGVRLGWSIIPDELLYSNGFPIINDFHRIVTTSFNGASNIAQAGGLACLSSG 313
Query: 382 GFKALTSTIHHYLEHAKIL 326
G K + S ++Y E+ KIL
Sbjct: 314 GLKEIRSVNNYYKENRKIL 332
>gb|AAN59772.1| Putative transaminase [Oryza sativa (japonica cultivar-group)]
Length = 458
Score = 96.3 bits (238), Expect(2) = 7e-42
Identities = 43/84 (51%), Positives = 61/84 (72%)
Frame = -1
Query: 333 KYLVDTFESLALKVYGGRNAPYIWVHFPGLSSWDVFNEFLERAAIVIIPGHQDFGPGGKE 154
+ LV+TF SL +V+GG +APY+WV FPG SWDVF E LE+ ++ +PG FGPGG+
Sbjct: 375 RVLVETFRSLGKEVHGGGDAPYVWVRFPGRRSWDVFAEILEKTHVITVPG-SGFGPGGEG 433
Query: 153 YVRVSAFGHRECMLEASRRIRKLL 82
++RVSAF R+ +LEA +R++ L
Sbjct: 434 FIRVSAFNSRDKVLEACQRLKSFL 457
Score = 96.3 bits (238), Expect(2) = 7e-42
Identities = 47/80 (58%), Positives = 60/80 (74%), Gaps = 1/80 (1%)
Frame = -3
Query: 562 SFSKSAGFTGVRLGWTFVPEELRYANGYSVLKDYDRIVCTSFHGASNIVQAGGLACLS-P 386
SFSK AGFTGVRLGW VP+EL Y++G V +D+DR+VCT F+GAS I QAGG+ACLS
Sbjct: 298 SFSKFAGFTGVRLGWAVVPDELLYSDGVPVARDFDRVVCTCFNGASGIAQAGGVACLSTE 357
Query: 385 EGFKALTSTIHHYLEHAKIL 326
EG A+ + Y E+A++L
Sbjct: 358 EGRGAVARVVGVYRENARVL 377
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 554,307,453
Number of Sequences: 1393205
Number of extensions: 13147190
Number of successful extensions: 30239
Number of sequences better than 10.0: 114
Number of HSP's better than 10.0 without gapping: 29110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30170
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
