Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013969A_C01 KMC013969A_c01
(569 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194349.1| putative protein; protein id: At4g26190.1 [Arab... 72 5e-12
gb|AAM22488.1| 36I5.7 [Oryza sativa (japonica cultivar-group)] 71 1e-11
gb|AAM47581.1| unknown protein [Sorghum bicolor] 70 1e-11
dbj|BAB02526.1| emb|CAB39684.1~gene_id:MOD1.21~similar to unknow... 62 5e-09
ref|NP_189619.1| unknown protein; protein id: At3g29760.1 [Arabi... 62 5e-09
>ref|NP_194349.1| putative protein; protein id: At4g26190.1 [Arabidopsis thaliana]
gi|7485838|pir||T04274 hypothetical protein F20B18.300 -
Arabidopsis thaliana gi|4538948|emb|CAB39684.1| putative
protein [Arabidopsis thaliana] gi|7269470|emb|CAB79474.1|
putative protein [Arabidopsis thaliana]
Length = 1067
Score = 72.0 bits (175), Expect = 5e-12
Identities = 33/55 (60%), Positives = 44/55 (80%)
Frame = -2
Query: 568 DSSLGPEGDLRVYLKGLAMAENVQEYVSSNPFGQPPITETNPSWGYYCQVLESVK 404
DS+LGPEG+LR YL+ LA AENVQ++V+ NPFGQ ITET+ SW +Y + +E+ K
Sbjct: 1013 DSALGPEGELRKYLERLADAENVQKFVAENPFGQTAITETHESWEFYSKAVEAHK 1067
>gb|AAM22488.1| 36I5.7 [Oryza sativa (japonica cultivar-group)]
Length = 261
Score = 70.9 bits (172), Expect = 1e-11
Identities = 30/50 (60%), Positives = 41/50 (82%)
Frame = -2
Query: 568 DSSLGPEGDLRVYLKGLAMAENVQEYVSSNPFGQPPITETNPSWGYYCQV 419
D+SLGP GDLRVYL+ L +AE+V+ YV +NPFGQP IT+++P W +Y Q+
Sbjct: 210 DNSLGPGGDLRVYLENLTVAEDVECYVRNNPFGQPFITQSDPHWSFYAQI 259
>gb|AAM47581.1| unknown protein [Sorghum bicolor]
Length = 245
Score = 70.5 bits (171), Expect = 1e-11
Identities = 29/52 (55%), Positives = 42/52 (80%)
Frame = -2
Query: 568 DSSLGPEGDLRVYLKGLAMAENVQEYVSSNPFGQPPITETNPSWGYYCQVLE 413
D+SLGP GDLRVYL+ LA A++V+ +V +NPFGQP IT+++P W +Y Q+ +
Sbjct: 184 DNSLGPGGDLRVYLQNLAAADDVERFVRNNPFGQPFITKSDPHWNFYAQIAD 235
>dbj|BAB02526.1| emb|CAB39684.1~gene_id:MOD1.21~similar to unknown protein
[Arabidopsis thaliana]
Length = 559
Score = 62.0 bits (149), Expect = 5e-09
Identities = 26/55 (47%), Positives = 40/55 (72%)
Frame = -2
Query: 568 DSSLGPEGDLRVYLKGLAMAENVQEYVSSNPFGQPPITETNPSWGYYCQVLESVK 404
D+SLG GDLR++L+ L AENVQ+++ NPFGQ ITE + SW +Y +++ ++
Sbjct: 492 DTSLGNGGDLRLHLEKLVEAENVQDFIKKNPFGQEAITEVSESWEFYREIIRMLR 546
>ref|NP_189619.1| unknown protein; protein id: At3g29760.1 [Arabidopsis thaliana]
Length = 533
Score = 62.0 bits (149), Expect = 5e-09
Identities = 26/55 (47%), Positives = 40/55 (72%)
Frame = -2
Query: 568 DSSLGPEGDLRVYLKGLAMAENVQEYVSSNPFGQPPITETNPSWGYYCQVLESVK 404
D+SLG GDLR++L+ L AENVQ+++ NPFGQ ITE + SW +Y +++ ++
Sbjct: 466 DTSLGNGGDLRLHLEKLVEAENVQDFIKKNPFGQEAITEVSESWEFYREIIRMLR 520
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 466,937,855
Number of Sequences: 1393205
Number of extensions: 9374325
Number of successful extensions: 17290
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 17006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17287
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
