Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013963A_C01 KMC013963A_c01
(630 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC55773.1| OSJNBb0041J06.18 [Oryza sativa (japonica cultiva... 35 0.81
gb|AAN04974.1| putative reverse transcriptase, 5'-partial [Oryza... 35 0.81
gb|AAM54146.1|AC104616_5 putative reverse transcriptase. [Oryza ... 35 0.81
gb|AAK39575.1|AC025296_10 putative reverse transcriptase [Oryza ... 35 0.81
gb|EAA19716.1| hypothetical protein [Plasmodium yoelii yoelii] 34 1.8
>dbj|BAC55773.1| OSJNBb0041J06.18 [Oryza sativa (japonica cultivar-group)]
Length = 185
Score = 35.0 bits (79), Expect = 0.81
Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 11/151 (7%)
Frame = -3
Query: 538 WPPPPDGVFKLNFDTSVLAS-S*AGLSLVVRDCAG*EVFSIQN*V-FGASLISRDG*S-Y 368
W PPP G KLN D + A+ G V+RD G + + + F ++S + +
Sbjct: 19 WAPPPAGKIKLNVDAAYQANRKTGGWGFVLRDEEGHALLAGAGRLEFVHDVVSAEARACL 78
Query: 367 SVLVDLF---LTSVILKTDCYNLF-VQWKKKHVSASYFGVYCRTLFLLSASFSFVDLSFV 200
S L+ + +T V +++D L H A ++ LL F+ +SF
Sbjct: 79 SALLAISVQGVTEVEIESDSAILVSAVTSSSHSQAVGATIFAEIKMLLQLHFANSKVSFA 138
Query: 199 RRG-NKVANDLAKLAFS---SHGYVWIEDSP 119
R N VA++LAK+ S VW++ P
Sbjct: 139 PRSCNNVAHNLAKIGVSWDPDQSVVWVDPLP 169
>gb|AAN04974.1| putative reverse transcriptase, 5'-partial [Oryza sativa (japonica
cultivar-group)]
Length = 507
Score = 35.0 bits (79), Expect = 0.81
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = -3
Query: 541 CWPPPPDGVFKLNFDTSVLASS-*AGLSLVVRDCAG*EVFS 422
CW P DG KLN D S ASS GL +++R+ AG +F+
Sbjct: 345 CWERPKDGWMKLNVDGSFDASSGKGGLGMILRNSAGDIIFT 385
>gb|AAM54146.1|AC104616_5 putative reverse transcriptase. [Oryza sativa (japonica
cultivar-group)]
Length = 493
Score = 35.0 bits (79), Expect = 0.81
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = -3
Query: 541 CWPPPPDGVFKLNFDTSVLASS-*AGLSLVVRDCAG*EVFS 422
CW P DG KLN D S ASS GL +++R+ AG +F+
Sbjct: 331 CWERPKDGWMKLNVDGSFDASSGKGGLGMILRNSAGDIIFT 371
>gb|AAK39575.1|AC025296_10 putative reverse transcriptase [Oryza sativa]
Length = 791
Score = 35.0 bits (79), Expect = 0.81
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = -3
Query: 541 CWPPPPDGVFKLNFDTSVLASS-*AGLSLVVRDCAG*EVFS 422
CW P DG KLN D S ASS GL +++R+ AG +F+
Sbjct: 629 CWERPKDGWMKLNVDGSFDASSGKGGLGMILRNSAGDIIFT 669
>gb|EAA19716.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 203
Score = 33.9 bits (76), Expect = 1.8
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Frame = +1
Query: 40 IEVSKNLHHLNIINQKSQKTTEQQA------L*ENLRSKHNHEKRKPILPSHLQPYSPF* 201
+E +N +L +N+ ++ ++Q L + +SKH ++ K S + YS
Sbjct: 54 LEEYENAKYLEELNKNREEKIKEQEKRYIKKLKKQYKSKHKKKRSKDSSSSSSRSYSSSS 113
Query: 202 QKKDQQRRKKQIKGKEFCNTLQNKKR*HASFSIEQTNYS 318
++D ++RKK K KE N + KK ++ S + TN S
Sbjct: 114 SERDTKKRKK--KSKE--NKKKRKKHKESTSSSDDTNSS 148
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 535,849,068
Number of Sequences: 1393205
Number of extensions: 11414697
Number of successful extensions: 36192
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 34481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36036
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
