Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013958A_C01 KMC013958A_c01
(779 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK81874.1| putative beta-galactosidase BG1 [Vitis vinifera] 324 8e-88
gb|AAF70825.1|AF154424_1 putative beta-galactosidase [Lycopersic... 323 1e-87
emb|CAA10128.1| beta-galactosidase [Cicer arietinum] 323 2e-87
pir||B85429 beta-galactosidase like protein [imported] - Arabido... 322 5e-87
pir||T04600 probable beta-galactosidase (EC 3.2.1.23) F23E13.200... 322 5e-87
>gb|AAK81874.1| putative beta-galactosidase BG1 [Vitis vinifera]
Length = 854
Score = 324 bits (831), Expect = 8e-88
Identities = 152/195 (77%), Positives = 172/195 (87%)
Frame = +3
Query: 192 METTSVSKFLLPFLCFALFSSILVVHSAVTYDSKALLINGQRRILISGSIHYPRSTPDMW 371
MET+SVSK + F +F ++ +VTYD KA++INGQRRILISGSIHYPRSTPDMW
Sbjct: 1 METSSVSKLFIFFFVPLMFLHSQLIQCSVTYDKKAIVINGQRRILISGSIHYPRSTPDMW 60
Query: 372 EDLIQKAKDGGLDVIETYVFWNVHEPSQGNYNFEGRYDLVRFVKTIQKAGLYAHLRIGPY 551
EDLI+KAKDGGLDVI+TY+FWNVHEPS GNYNFEGRYDLVRF+KT+QK GLY HLRIGPY
Sbjct: 61 EDLIRKAKDGGLDVIDTYIFWNVHEPSPGNYNFEGRYDLVRFIKTVQKVGLYVHLRIGPY 120
Query: 552 VCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVGMMKSEHLYESXGGPIILS 731
VCAEWNFGGFPVWLK+VPGISFRT+NEPFK AMQGFT+KIV MMKSE+L+ S GGPIILS
Sbjct: 121 VCAEWNFGGFPVWLKFVPGISFRTNNEPFKMAMQGFTQKIVHMMKSENLFASQGGPIILS 180
Query: 732 QIENEYGKQSQLLGA 776
QIENEYG +S+ LGA
Sbjct: 181 QIENEYGPESRELGA 195
>gb|AAF70825.1|AF154424_1 putative beta-galactosidase [Lycopersicon esculentum]
Length = 845
Score = 323 bits (829), Expect = 1e-87
Identities = 153/195 (78%), Positives = 172/195 (87%)
Frame = +3
Query: 192 METTSVSKFLLPFLCFALFSSILVVHSAVTYDSKALLINGQRRILISGSIHYPRSTPDMW 371
ME S+ K++L + C LF S +VH VTYD KA++INGQRR+L SGSIHYPRSTP+MW
Sbjct: 1 MEVNSLQKWVLLW-CIVLFISSGLVHCDVTYDRKAIVINGQRRLLFSGSIHYPRSTPEMW 59
Query: 372 EDLIQKAKDGGLDVIETYVFWNVHEPSQGNYNFEGRYDLVRFVKTIQKAGLYAHLRIGPY 551
EDLI KAK+GGLDV+ETYVFWNVHEPS GNYNFEGRYDLVRFVKTIQKAGLYAHLRIGPY
Sbjct: 60 EDLINKAKEGGLDVVETYVFWNVHEPSPGNYNFEGRYDLVRFVKTIQKAGLYAHLRIGPY 119
Query: 552 VCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVGMMKSEHLYESXGGPIILS 731
VCAEWNFGGFPVWLKYVPGISFR DNEPFK AM+G+ EKIV +MKS +L+ES GGPIILS
Sbjct: 120 VCAEWNFGGFPVWLKYVPGISFRADNEPFKNAMKGYAEKIVNLMKSHNLFESQGGPIILS 179
Query: 732 QIENEYGKQSQLLGA 776
QIENEYG Q+++LGA
Sbjct: 180 QIENEYGPQAKVLGA 194
>emb|CAA10128.1| beta-galactosidase [Cicer arietinum]
Length = 745
Score = 323 bits (827), Expect = 2e-87
Identities = 155/196 (79%), Positives = 169/196 (86%)
Frame = +3
Query: 192 METTSVSKFLLPFLCFALFSSILVVHSAVTYDSKALLINGQRRILISGSIHYPRSTPDMW 371
MET SVSK L F F F ++H +VTYD KA++INGQRRILISGSIHYPRSTP+MW
Sbjct: 1 METNSVSKLLSLFF-FLFFVCSQLIHCSVTYDRKAIIINGQRRILISGSIHYPRSTPEMW 59
Query: 372 EDLIQKAKDGGLDVIETYVFWNVHEPSQGNYNFEGRYDLVRFVKTIQKAGLYAHLRIGPY 551
EDLIQKAK GGLDVI+TYVFWNVHEPS NYNFEGRYDLVRF+KT+QK GLY HLRIGPY
Sbjct: 60 EDLIQKAKVGGLDVIDTYVFWNVHEPSPSNYNFEGRYDLVRFIKTVQKVGLYVHLRIGPY 119
Query: 552 VCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVGMMKSEHLYESXGGPIILS 731
VCAEWNFGGFPVWLKYVPGISFRTDN PFK AMQGFT+KIV MMK+E L++S GGPIILS
Sbjct: 120 VCAEWNFGGFPVWLKYVPGISFRTDNGPFKAAMQGFTQKIVQMMKNEKLFQSQGGPIILS 179
Query: 732 QIENEYGKQSQLLGAV 779
QIENEYG Q + LGAV
Sbjct: 180 QIENEYGPQGRALGAV 195
>pir||B85429 beta-galactosidase like protein [imported] - Arabidopsis thaliana
gi|4006924|emb|CAB16852.1| beta-galactosidase like
protein [Arabidopsis thaliana]
gi|7270584|emb|CAB80302.1| beta-galactosidase like
protein [Arabidopsis thaliana]
Length = 853
Score = 322 bits (824), Expect = 5e-87
Identities = 155/191 (81%), Positives = 167/191 (87%)
Frame = +3
Query: 204 SVSKFLLPFLCFALFSSILVVHSAVTYDSKALLINGQRRILISGSIHYPRSTPDMWEDLI 383
S S+ +L F L + V VTYD KALLINGQRRIL SGSIHYPRSTPDMWEDLI
Sbjct: 6 SASRLILWFCLGFLILGVGFVQCGVTYDRKALLINGQRRILFSGSIHYPRSTPDMWEDLI 65
Query: 384 QKAKDGGLDVIETYVFWNVHEPSQGNYNFEGRYDLVRFVKTIQKAGLYAHLRIGPYVCAE 563
QKAKDGG+DVIETYVFWN+HEPS G Y+FEGR DLVRFVKTI KAGLYAHLRIGPYVCAE
Sbjct: 66 QKAKDGGIDVIETYVFWNLHEPSPGKYDFEGRNDLVRFVKTIHKAGLYAHLRIGPYVCAE 125
Query: 564 WNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVGMMKSEHLYESXGGPIILSQIEN 743
WNFGGFPVWLKYVPGISFRTDNEPFKRAM+GFTE+IV +MKSE+L+ES GGPIILSQIEN
Sbjct: 126 WNFGGFPVWLKYVPGISFRTDNEPFKRAMKGFTERIVELMKSENLFESQGGPIILSQIEN 185
Query: 744 EYGKQSQLLGA 776
EYG+Q QLLGA
Sbjct: 186 EYGRQGQLLGA 196
>pir||T04600 probable beta-galactosidase (EC 3.2.1.23) F23E13.200 - Arabidopsis
thaliana gi|2961390|emb|CAA18137.1| beta-galactosidase
like protein [Arabidopsis thaliana]
Length = 853
Score = 322 bits (824), Expect = 5e-87
Identities = 155/191 (81%), Positives = 167/191 (87%)
Frame = +3
Query: 204 SVSKFLLPFLCFALFSSILVVHSAVTYDSKALLINGQRRILISGSIHYPRSTPDMWEDLI 383
S S+ +L F L + V VTYD KALLINGQRRIL SGSIHYPRSTPDMWEDLI
Sbjct: 9 SASRLILWFCLGFLILGVGFVQCGVTYDRKALLINGQRRILFSGSIHYPRSTPDMWEDLI 68
Query: 384 QKAKDGGLDVIETYVFWNVHEPSQGNYNFEGRYDLVRFVKTIQKAGLYAHLRIGPYVCAE 563
QKAKDGG+DVIETYVFWN+HEPS G Y+FEGR DLVRFVKTI KAGLYAHLRIGPYVCAE
Sbjct: 69 QKAKDGGIDVIETYVFWNLHEPSPGKYDFEGRNDLVRFVKTIHKAGLYAHLRIGPYVCAE 128
Query: 564 WNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVGMMKSEHLYESXGGPIILSQIEN 743
WNFGGFPVWLKYVPGISFRTDNEPFKRAM+GFTE+IV +MKSE+L+ES GGPIILSQIEN
Sbjct: 129 WNFGGFPVWLKYVPGISFRTDNEPFKRAMKGFTERIVELMKSENLFESQGGPIILSQIEN 188
Query: 744 EYGKQSQLLGA 776
EYG+Q QLLGA
Sbjct: 189 EYGRQGQLLGA 199
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 696,242,126
Number of Sequences: 1393205
Number of extensions: 15938338
Number of successful extensions: 57309
Number of sequences better than 10.0: 177
Number of HSP's better than 10.0 without gapping: 52075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56603
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 38655378996
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
