Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013956A_C01 KMC013956A_c01
(649 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM62558.1| unknown [Arabidopsis thaliana] 78 2e-17
ref|NP_565088.1| expressed protein; protein id: At1g74660.1, sup... 78 2e-17
dbj|BAB02135.1| gb|AAF15936.1~gene_id:MLD15.10~similar to unknow... 72 1e-16
ref|NP_194197.1| putative protein; protein id: At4g24660.1, supp... 70 1e-13
ref|NP_565106.1| expressed protein; protein id: At1g75240.1, sup... 64 4e-12
>gb|AAM62558.1| unknown [Arabidopsis thaliana]
Length = 101
Score = 77.8 bits (190), Expect(2) = 2e-17
Identities = 33/40 (82%), Positives = 36/40 (89%)
Frame = +1
Query: 79 YAVDGCREFMASGEEGTSDSLACAACGCHRNFHKKEVQTE 198
YAVDGCREFMA+G EGT D+L CAACGCHRNFH+KEV TE
Sbjct: 52 YAVDGCREFMAAGVEGTVDALRCAACGCHRNFHRKEVDTE 91
Score = 33.1 bits (74), Expect(2) = 2e-17
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = +3
Query: 21 VRSVKYGECQKNHAANVG 74
+ +V+Y ECQKNHAAN+G
Sbjct: 33 ISNVRYVECQKNHAANIG 50
>ref|NP_565088.1| expressed protein; protein id: At1g74660.1, supported by cDNA:
14583. [Arabidopsis thaliana] gi|25406359|pir||G96775
hypothetical protein F1M20.34 [imported] - Arabidopsis
thaliana gi|12324813|gb|AAG52375.1|AC011765_27
hypothetical protein; 104370-104062 [Arabidopsis
thaliana]
Length = 102
Score = 77.8 bits (190), Expect(2) = 2e-17
Identities = 33/40 (82%), Positives = 36/40 (89%)
Frame = +1
Query: 79 YAVDGCREFMASGEEGTSDSLACAACGCHRNFHKKEVQTE 198
YAVDGCREFMA+G EGT D+L CAACGCHRNFH+KEV TE
Sbjct: 53 YAVDGCREFMAAGVEGTVDALRCAACGCHRNFHRKEVDTE 92
Score = 33.1 bits (74), Expect(2) = 2e-17
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = +3
Query: 21 VRSVKYGECQKNHAANVG 74
+ +V+Y ECQKNHAAN+G
Sbjct: 34 ISNVRYVECQKNHAANIG 51
>dbj|BAB02135.1| gb|AAF15936.1~gene_id:MLD15.10~similar to unknown protein
[Arabidopsis thaliana] gi|21555769|gb|AAM63930.1|
unknown [Arabidopsis thaliana]
Length = 100
Score = 71.6 bits (174), Expect(2) = 1e-16
Identities = 31/41 (75%), Positives = 37/41 (89%), Gaps = 1/41 (2%)
Frame = +1
Query: 79 YAVDGCREFMAS-GEEGTSDSLACAACGCHRNFHKKEVQTE 198
YAVDGCREFMAS GEEGT +L CAACGCHR+FH++E++TE
Sbjct: 47 YAVDGCREFMASRGEEGTVAALTCAACGCHRSFHRREIETE 87
Score = 37.0 bits (84), Expect(2) = 1e-16
Identities = 18/32 (56%), Positives = 22/32 (68%), Gaps = 8/32 (25%)
Frame = +3
Query: 3 EDPQRN--------VRSVKYGECQKNHAANVG 74
E+P R+ VR+V+YGECQKNHAA VG
Sbjct: 14 EEPSRSSSTASSLTVRTVRYGECQKNHAAAVG 45
>ref|NP_194197.1| putative protein; protein id: At4g24660.1, supported by cDNA:
gi_16612294 [Arabidopsis thaliana]
gi|7485966|pir||T05568 hypothetical protein F22K18.140 -
Arabidopsis thaliana gi|4220524|emb|CAA22997.1| putative
protein [Arabidopsis thaliana]
gi|7269316|emb|CAB79376.1| putative protein [Arabidopsis
thaliana] gi|16612295|gb|AAL27510.1|AF439841_1
AT4g24660/F22K18_140 [Arabidopsis thaliana]
gi|21928089|gb|AAM78073.1| AT4g24660/F22K18_140
[Arabidopsis thaliana]
Length = 220
Score = 70.5 bits (171), Expect(2) = 1e-13
Identities = 29/41 (70%), Positives = 35/41 (84%)
Frame = +1
Query: 79 YAVDGCREFMASGEEGTSDSLACAACGCHRNFHKKEVQTEG 201
+AVDGC EFM SGE+GT D+L CAACGCHRNFH+KE ++ G
Sbjct: 63 HAVDGCCEFMPSGEDGTLDALKCAACGCHRNFHRKETESIG 103
Score = 27.7 bits (60), Expect(2) = 1e-13
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 30 VKYGECQKNHAANVG 74
++Y EC KNHA N+G
Sbjct: 47 IRYRECLKNHAVNIG 61
>ref|NP_565106.1| expressed protein; protein id: At1g75240.1, supported by cDNA:
10873. [Arabidopsis thaliana] gi|25406424|pir||G96782
hypothetical protein F22H5.4 [imported] - Arabidopsis
thaliana gi|10092273|gb|AAG12686.1|AC025814_10
hypothetical protein; 24548-23619 [Arabidopsis thaliana]
gi|21536702|gb|AAM61034.1| unknown [Arabidopsis
thaliana]
Length = 309
Score = 64.3 bits (155), Expect(2) = 4e-12
Identities = 27/39 (69%), Positives = 31/39 (79%)
Frame = +1
Query: 88 DGCREFMASGEEGTSDSLACAACGCHRNFHKKEVQTEGS 204
DGC EFM SGEEGT ++L CAAC CHRNFH+KE+ GS
Sbjct: 93 DGCGEFMPSGEEGTIEALRCAACDCHRNFHRKEMDGVGS 131
Score = 28.5 bits (62), Expect(2) = 4e-12
Identities = 11/16 (68%), Positives = 14/16 (86%)
Frame = +3
Query: 27 SVKYGECQKNHAANVG 74
+V+Y EC KNHAA+VG
Sbjct: 73 TVRYRECLKNHAASVG 88
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 544,208,890
Number of Sequences: 1393205
Number of extensions: 11277630
Number of successful extensions: 29820
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 28691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29788
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27576232529
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
