Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013949A_C01 KMC013949A_c01
(473 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175819.1| hypothetical protein; protein id: At1g54170.1 [... 47 8e-05
pir||S46965 microfilarial sheath protein - nematode (Brugia paha... 34 0.90
sp|Q9YHZ7|ESR1_ICTPU Estrogen receptor (ER) (Estradiol receptor)... 33 2.0
gb|AAC69548.1| estrogen receptor type alpha [Ictalurus punctatus] 33 2.0
gb|EAA28667.1| predicted protein [Neurospora crassa] 32 3.4
>ref|NP_175819.1| hypothetical protein; protein id: At1g54170.1 [Arabidopsis
thaliana] gi|22531120|gb|AAM97064.1| unknown protein
[Arabidopsis thaliana] gi|23197992|gb|AAN15523.1|
unknown protein [Arabidopsis thaliana]
Length = 587
Score = 47.4 bits (111), Expect = 8e-05
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Frame = -3
Query: 468 FSGPQ-PIIYDQPLGRMPSSRPYFQPNGPQYGQ--LLGHPRPALYMPS--YLPEMPYQGR 304
F G Q P++Y+ P+ + Y+ PN PQY Q ++ RP L+MP Y PEMPY+GR
Sbjct: 526 FPGQQHPMMYNNTTQLSPN-QTYYSPNSPQYPQPMMVTQQRPILFMPPTPYQPEMPYKGR 584
Query: 303 D 301
D
Sbjct: 585 D 585
>pir||S46965 microfilarial sheath protein - nematode (Brugia pahangi)
gi|516355|emb|CAA84597.1| microfilarial sheath protein
[Brugia pahangi]
Length = 228
Score = 33.9 bits (76), Expect = 0.90
Identities = 20/54 (37%), Positives = 25/54 (46%)
Frame = -3
Query: 459 PQPIIYDQPLGRMPSSRPYFQPNGPQYGQLLGHPRPALYMPSYLPEMPYQGRDY 298
PQP Y QP + P + Y P PQY Q+ +P+P Y P YQ Y
Sbjct: 135 PQPPQYPQP-PQYPQAPQY--PQAPQYPQVPQYPQPPQYQPPQYQPPQYQPPQY 185
>sp|Q9YHZ7|ESR1_ICTPU Estrogen receptor (ER) (Estradiol receptor) (ER-alpha)
gi|10945423|gb|AAG24543.1|AF253505_1 estrogen receptor
alpha [Ictalurus punctatus]
Length = 617
Score = 32.7 bits (73), Expect = 2.0
Identities = 21/62 (33%), Positives = 29/62 (45%)
Frame = -3
Query: 438 QPLGRMPSSRPYFQPNGPQYGQLLGHPRPALYMPSYLPEMPYQGRDY*RPTSLTVLLASD 259
QPL SS P F P+ PQ LGHP + ++PY Y P+ ++ +S
Sbjct: 88 QPLPNGSSSPPVFVPSSPQLSPFLGHPPAGQHTAQ---QVPY----YLEPSGTSIYRSSV 140
Query: 258 LA 253
LA
Sbjct: 141 LA 142
>gb|AAC69548.1| estrogen receptor type alpha [Ictalurus punctatus]
Length = 581
Score = 32.7 bits (73), Expect = 2.0
Identities = 21/62 (33%), Positives = 29/62 (45%)
Frame = -3
Query: 438 QPLGRMPSSRPYFQPNGPQYGQLLGHPRPALYMPSYLPEMPYQGRDY*RPTSLTVLLASD 259
QPL SS P F P+ PQ LGHP + ++PY Y P+ ++ +S
Sbjct: 52 QPLPNGSSSPPVFVPSSPQLSPFLGHPPAGQHTAQ---QVPY----YLEPSGTSIYRSSV 104
Query: 258 LA 253
LA
Sbjct: 105 LA 106
>gb|EAA28667.1| predicted protein [Neurospora crassa]
Length = 477
Score = 32.0 bits (71), Expect = 3.4
Identities = 17/46 (36%), Positives = 23/46 (49%)
Frame = -3
Query: 423 MPSSRPYFQPNGPQYGQLLGHPRPALYMPSYLPEMPYQGRDY*RPT 286
+P PYFQ G GQ G+ PA +P +P G+ Y +PT
Sbjct: 332 LPLPLPYFQGQGLPLGQPNGYYPPATAAAMSVPSVPPPGQVYGQPT 377
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 437,189,962
Number of Sequences: 1393205
Number of extensions: 9621706
Number of successful extensions: 24981
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 24215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24958
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12815311608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
