Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013935A_C01 KMC013935A_c01
(527 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D96833 hypothetical protein F18B13.25 [imported] - Arabidop... 89 3e-17
ref|NP_565232.1| polygalacturonase, putative; protein id: At1g80... 88 5e-17
gb|AAO27531.1| polygalacturonase [Musa acuminata] 85 5e-16
gb|AAF61444.1|AF138858_1 polygalacturonase [Lycopersicon esculen... 82 3e-15
ref|NP_173760.1| polygalacturonase, putative; protein id: At1g23... 72 5e-12
>pir||D96833 hypothetical protein F18B13.25 [imported] - Arabidopsis thaliana
gi|5902387|gb|AAD55489.1|AC009322_29 Similar to
polygalacturonases [Arabidopsis thaliana]
Length = 459
Score = 89.0 bits (219), Expect = 3e-17
Identities = 41/87 (47%), Positives = 60/87 (68%), Gaps = 1/87 (1%)
Frame = -3
Query: 522 MQTSAVQVRNISFTDIQGTSATEEAIKFACSDASPCEGLYL*NIFLESCFG-GNTRSYCW 346
+QTSA+ + NISF ++GTSA++EAIK +CSD+SPC + L +I LE G G T S+CW
Sbjct: 364 LQTSAISIENISFVHVRGTSASKEAIKISCSDSSPCRNILLQDIDLEPSNGDGFTESFCW 423
Query: 345 QAHGFARGVMHPAACFSSSDDFIRQNV 265
+A+G + G ++P C S F+ Q+V
Sbjct: 424 EAYGSSSGQVYPPPCLSDDTSFLEQSV 450
>ref|NP_565232.1| polygalacturonase, putative; protein id: At1g80170.1 [Arabidopsis
thaliana] gi|15028105|gb|AAK76676.1| putative
polygalacturonase [Arabidopsis thaliana]
gi|23296942|gb|AAN13206.1| putative polygalacturonase
[Arabidopsis thaliana]
Length = 444
Score = 88.2 bits (217), Expect = 5e-17
Identities = 41/86 (47%), Positives = 59/86 (67%), Gaps = 1/86 (1%)
Frame = -3
Query: 519 QTSAVQVRNISFTDIQGTSATEEAIKFACSDASPCEGLYL*NIFLESCFG-GNTRSYCWQ 343
QTSA+ + NISF ++GTSA++EAIK +CSD+SPC + L +I LE G G T S+CW+
Sbjct: 350 QTSAISIENISFVHVRGTSASKEAIKISCSDSSPCRNILLQDIDLEPSNGDGFTESFCWE 409
Query: 342 AHGFARGVMHPAACFSSSDDFIRQNV 265
A+G + G ++P C S F+ Q+V
Sbjct: 410 AYGSSSGQVYPPPCLSDDTSFLEQSV 435
>gb|AAO27531.1| polygalacturonase [Musa acuminata]
Length = 177
Score = 85.1 bits (209), Expect = 5e-16
Identities = 42/86 (48%), Positives = 58/86 (66%), Gaps = 1/86 (1%)
Frame = -3
Query: 519 QTSAVQVRNISFTDIQGTSATEEAIKFACSDASPCEGLYL*NIFLESCFGGNTRSYCWQA 340
QTSAV V ISF +I GTS T++AIKF+CSD+SPCE +YL ++ + GGN +YCW+A
Sbjct: 83 QTSAVXVHQISFIEIXGTSTTKDAIKFSCSDSSPCEKIYLQDVNMSLGSGGNASAYCWKA 142
Query: 339 HGFARGVMHPAACFSSS-DDFIRQNV 265
F+ G + P +C + + I QNV
Sbjct: 143 SXFSSGWVIPPSCLTRAVVGLINQNV 168
>gb|AAF61444.1|AF138858_1 polygalacturonase [Lycopersicon esculentum]
Length = 452
Score = 82.4 bits (202), Expect = 3e-15
Identities = 40/86 (46%), Positives = 53/86 (61%)
Frame = -3
Query: 519 QTSAVQVRNISFTDIQGTSATEEAIKFACSDASPCEGLYL*NIFLESCFGGNTRSYCWQA 340
+TS + + NISF I+GTSATE AI ACSD+ PC LYL +I L S G T +CWQA
Sbjct: 360 KTSNIHIDNISFMGIKGTSATERAITLACSDSFPCRRLYLEDIQLTSSSGDPTTFFCWQA 419
Query: 339 HGFARGVMHPAACFSSSDDFIRQNVL 262
+G G+ +P CF +D ++ L
Sbjct: 420 YGTTSGLNYPPPCFPCNDGILQPKFL 445
>ref|NP_173760.1| polygalacturonase, putative; protein id: At1g23460.1 [Arabidopsis
thaliana]
Length = 459
Score = 71.6 bits (174), Expect = 5e-12
Identities = 38/80 (47%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Frame = -3
Query: 519 QTSAVQVRNISFTDIQGTSATEEAIKFACSDASPCEGLYL*NIFLESCFGGNTRSYCWQA 340
QTSAV++ I + +I GT+ + +AIKFACSD PC + L N+ LE G +YC A
Sbjct: 362 QTSAVKISQIMYRNITGTTKSAKAIKFACSDTVPCSHIVLNNVNLEG-NDGQVEAYCNSA 420
Query: 339 HGFARGVMHPAA-CFSSSDD 283
GF GV+HP+A C S DD
Sbjct: 421 EGFGYGVIHPSADCLYSHDD 440
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 429,583,650
Number of Sequences: 1393205
Number of extensions: 8791384
Number of successful extensions: 13553
Number of sequences better than 10.0: 182
Number of HSP's better than 10.0 without gapping: 13244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13517
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
