Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013926A_C01 KMC013926A_c01
(878 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA05720.1| agCP13004 [Anopheles gambiae str. PEST] 30 0.38
ref|NP_473269.2| hypothetical protein [Plasmodium falciparum 3D7... 34 3.3
emb|CAC94910.1| replication initiation protein [Plasmid pEMT8] 34 3.3
>gb|EAA05720.1| agCP13004 [Anopheles gambiae str. PEST]
Length = 1049
Score = 30.4 bits (67), Expect(2) = 0.38
Identities = 20/69 (28%), Positives = 31/69 (43%), Gaps = 4/69 (5%)
Frame = +3
Query: 453 HPSSSR----NRDTLQFPHLNPSSSRRMNHHESARQRHLTKGVCSPKHTQKTRGSTPRNY 620
H SSS +RD ++ SS+ R HH S+ R + + ++ S R+
Sbjct: 51 HSSSSHKVHCSRDPRNSKGMHRSSNSRRAHHNSSSSRGIRRKSKRSSRNREVHSSISRDL 110
Query: 621 VNNSTNKYK 647
NNS+N K
Sbjct: 111 HNNSSNMRK 119
Score = 25.4 bits (54), Expect(2) = 0.38
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +2
Query: 701 ISTKNITTVNHS*HASSRTNKYQTHSSTMSVCMLHEMICRLTQSTNMQSGTDGHHRISP 877
++ ++ + NHS H+SS ++ HSS+ S H + S N G+ +R P
Sbjct: 122 MNRRSSNSSNHSAHSSSSSSNNSAHSSSNSSRAPHNS----SSSNNSAHGSSNTNRRFP 176
>ref|NP_473269.2| hypothetical protein [Plasmodium falciparum 3D7]
gi|23477019|emb|CAB38983.2| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 936
Score = 33.9 bits (76), Expect = 3.3
Identities = 21/81 (25%), Positives = 40/81 (48%), Gaps = 14/81 (17%)
Frame = -3
Query: 819 LHIISCNMHTDIVDECV*Y-----LLVLLDAC*L*FTVVIFFVEI---------CNPRML 682
LHII + +I+ E + Y L+ + +C + ++ IF + + C +
Sbjct: 678 LHIIDFKRNNNIISEIILYSMYRSFLIFIISCQIIYSSWIFGLRLQCSQCGIFSCLLHFI 737
Query: 681 SLVISLSGYYLIYIYWCYYLH 619
+ +I L G +LIY+Y Y++H
Sbjct: 738 TWIILLPGMFLIYMYKNYFIH 758
>emb|CAC94910.1| replication initiation protein [Plasmid pEMT8]
Length = 316
Score = 33.9 bits (76), Expect = 3.3
Identities = 20/61 (32%), Positives = 36/61 (58%), Gaps = 3/61 (4%)
Frame = +3
Query: 351 TLIPSRGAHTS-TKTYMLA*SSSEFEIQNDLVYVHHP--SSSRNRDTLQFPHLNPSSSRR 521
T +P RG H T+T + A + E+ +++DL + P S S+ RDT +++PS+ +R
Sbjct: 12 TPVPVRGQHKPYTQTELFAANMLEWPVKDDLASMEFPLFSLSKRRDTTVREYVSPSTQKR 71
Query: 522 M 524
+
Sbjct: 72 V 72
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 762,534,764
Number of Sequences: 1393205
Number of extensions: 17242159
Number of successful extensions: 41366
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 39147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41308
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 47382100290
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
