Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013920A_C01 KMC013920A_c01
(577 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM20730.1| unknown protein [Arabidopsis thaliana] 241 4e-63
ref|NP_195381.2| hypothetical protein; protein id: At4g36630.1, ... 241 4e-63
pir||E85432 hypothetical protein AT4g36630 [imported] - Arabidop... 241 4e-63
gb|AAL58199.1|AC090882_2 TGF beta receptor associated protein-li... 167 9e-41
ref|XP_192902.1| similar to pallidin isoform 1; pallid; syntaxin... 82 6e-15
>gb|AAM20730.1| unknown protein [Arabidopsis thaliana]
Length = 1000
Score = 241 bits (616), Expect = 4e-63
Identities = 117/180 (65%), Positives = 146/180 (81%), Gaps = 4/180 (2%)
Frame = +1
Query: 49 MVHSAYDSSELVPNFPGKIESVVTYDSKLLVGCSDGSLRIYSPEPDS---PDRV-KPPYV 216
MVH+AYDS +L+ + P +I++V +Y SKL GC DGSLRIYSP S P + + YV
Sbjct: 1 MVHNAYDSFQLLKDCPARIDAVESYGSKLFAGCYDGSLRIYSPPESSASDPSELHQETYV 60
Query: 217 LEKNLTGFAKKPIVSLEVLESRELLLSLSESIAFHRLPSLETIAVITKAKGANVFCWDHR 396
LEK + GF+KKPIV++EVL SRELLLSLSESIAFH LP+LET+AVITKAKGAN + WD R
Sbjct: 61 LEKTVAGFSKKPIVAMEVLASRELLLSLSESIAFHGLPNLETVAVITKAKGANAYSWDDR 120
Query: 397 RGFLCFARQKRVSIYRHDGGRGLVEVKELGVPDMVKSMCWCGENICVGIRREYLILNASN 576
RGFLCF+RQKRV +++HDGG G VEV++ GVPD VKS+ WCGENIC+GI++EY+ILN +N
Sbjct: 121 RGFLCFSRQKRVCVFKHDGGGGFVEVRDYGVPDTVKSISWCGENICLGIKKEYVILNTAN 180
>ref|NP_195381.2| hypothetical protein; protein id: At4g36630.1, supported by cDNA:
gi_20466825 [Arabidopsis thaliana]
Length = 519
Score = 241 bits (616), Expect = 4e-63
Identities = 117/180 (65%), Positives = 146/180 (81%), Gaps = 4/180 (2%)
Frame = +1
Query: 49 MVHSAYDSSELVPNFPGKIESVVTYDSKLLVGCSDGSLRIYSPEPDS---PDRV-KPPYV 216
MVH+AYDS +L+ + P +I++V +Y SKL GC DGSLRIYSP S P + + YV
Sbjct: 1 MVHNAYDSFQLLKDCPARIDAVESYGSKLFAGCYDGSLRIYSPPESSASDPSELHQETYV 60
Query: 217 LEKNLTGFAKKPIVSLEVLESRELLLSLSESIAFHRLPSLETIAVITKAKGANVFCWDHR 396
LEK + GF+KKPIV++EVL SRELLLSLSESIAFH LP+LET+AVITKAKGAN + WD R
Sbjct: 61 LEKTVAGFSKKPIVAMEVLASRELLLSLSESIAFHGLPNLETVAVITKAKGANAYSWDDR 120
Query: 397 RGFLCFARQKRVSIYRHDGGRGLVEVKELGVPDMVKSMCWCGENICVGIRREYLILNASN 576
RGFLCF+RQKRV +++HDGG G VEV++ GVPD VKS+ WCGENIC+GI++EY+ILN +N
Sbjct: 121 RGFLCFSRQKRVCVFKHDGGGGFVEVRDYGVPDTVKSISWCGENICLGIKKEYVILNTAN 180
>pir||E85432 hypothetical protein AT4g36630 [imported] - Arabidopsis thaliana
gi|4006900|emb|CAB16830.1| hypothetical protein
[Arabidopsis thaliana] gi|7270611|emb|CAB80329.1|
hypothetical protein [Arabidopsis thaliana]
Length = 1003
Score = 241 bits (616), Expect = 4e-63
Identities = 117/180 (65%), Positives = 146/180 (81%), Gaps = 4/180 (2%)
Frame = +1
Query: 49 MVHSAYDSSELVPNFPGKIESVVTYDSKLLVGCSDGSLRIYSPEPDS---PDRV-KPPYV 216
MVH+AYDS +L+ + P +I++V +Y SKL GC DGSLRIYSP S P + + YV
Sbjct: 1 MVHNAYDSFQLLKDCPARIDAVESYGSKLFAGCYDGSLRIYSPPESSASDPSELHQETYV 60
Query: 217 LEKNLTGFAKKPIVSLEVLESRELLLSLSESIAFHRLPSLETIAVITKAKGANVFCWDHR 396
LEK + GF+KKPIV++EVL SRELLLSLSESIAFH LP+LET+AVITKAKGAN + WD R
Sbjct: 61 LEKTVAGFSKKPIVAMEVLASRELLLSLSESIAFHGLPNLETVAVITKAKGANAYSWDDR 120
Query: 397 RGFLCFARQKRVSIYRHDGGRGLVEVKELGVPDMVKSMCWCGENICVGIRREYLILNASN 576
RGFLCF+RQKRV +++HDGG G VEV++ GVPD VKS+ WCGENIC+GI++EY+ILN +N
Sbjct: 121 RGFLCFSRQKRVCVFKHDGGGGFVEVRDYGVPDTVKSISWCGENICLGIKKEYVILNTAN 180
>gb|AAL58199.1|AC090882_2 TGF beta receptor associated protein-like protein [Oryza sativa
(japonica cultivar-group)]
Length = 1038
Score = 167 bits (423), Expect = 9e-41
Identities = 96/214 (44%), Positives = 121/214 (55%), Gaps = 40/214 (18%)
Frame = +1
Query: 49 MVHSAYDSSELVPNFPGKIESVVTYDSKLLVGCSDGSLRIYSPEPDSPDRVKP--PYVLE 222
MVHSAYD+ ELV PG I +V Y +LLV DGSLRIY+ + + PY LE
Sbjct: 1 MVHSAYDAVELVSGVPGDIVAVAAYAGRLLVAGKDGSLRIYASPGHAGGGIPRDGPYALE 60
Query: 223 KNLTGFAKKPI-VSLEVLESRELLLSLSESIAFHRLPSLETIAVITKAKGANVFCWDHRR 399
+ ++ +++EV RELLLSL+E + HRLP LET+AVI K KGAN+F WD RR
Sbjct: 61 RQQPSLWRRGTPLAMEVSAGRELLLSLAECVNLHRLPGLETVAVIGKTKGANLFAWDDRR 120
Query: 400 GFLCFARQKRVSIYRHD-------------------------------------GGRGLV 468
G L R KR++I+R D GGR V
Sbjct: 121 GLLAVGRWKRLTIFRLDSENSAALPIRFRCDLSVCGYDLTVTSFGFRWKWRWPVGGREFV 180
Query: 469 EVKELGVPDMVKSMCWCGENICVGIRREYLILNA 570
EVKE GVPD VKSM WCG+NIC+GIR+EY+I+N+
Sbjct: 181 EVKEFGVPDTVKSMAWCGDNICLGIRKEYMIINS 214
>ref|XP_192902.1| similar to pallidin isoform 1; pallid; syntaxin 13-interacting
protein pallid; syntaxin 13 binding protein 1 [Mus
musculus]
Length = 886
Score = 81.6 bits (200), Expect = 6e-15
Identities = 57/191 (29%), Positives = 97/191 (49%), Gaps = 20/191 (10%)
Frame = +1
Query: 52 VHSAYDSSELVPNFPGKIESVVTYDSKLLVGCSDGSLRIY------------SPEPDSPD 195
+H A++ ++ P +I+ + ++ LLVG G L +Y SPE S +
Sbjct: 1 MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDVVPADVASPESGSCN 60
Query: 196 RVKPPYVLEKNLTGFAKKPIVSLEVLESRELLLSLSES-IAFHRLPSLETIAVITKAKGA 372
R + LEK+ F+KK I + V+ ++L+SL E+ I H L + + I ++KAKGA
Sbjct: 61 RFE--VTLEKSNKNFSKK-IQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGA 117
Query: 373 NVFCWDHRRGF-------LCFARQKRVSIYRHDGGRGLVEVKELGVPDMVKSMCWCGENI 531
++F D + +C A +K++ +Y + VPD+ KSM WC +I
Sbjct: 118 SLFTCDLQHTETGEEVLRMCVAVRKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSI 177
Query: 532 CVGIRREYLIL 564
CVG +R+Y ++
Sbjct: 178 CVGFKRDYYLI 188
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 562,590,728
Number of Sequences: 1393205
Number of extensions: 13835745
Number of successful extensions: 47950
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 45116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47848
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
