Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013913A_C01 KMC013913A_c01
(518 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||QQBEF6 HVLF4 protein - human cytomegalovirus (strain AD169) 32 5.7
ref|NP_040099.1| US14 [Human herpesvirus 5] gi|137146|sp|P09719|... 32 5.7
ref|XP_241767.1| hypothetical protein XP_241767 [Rattus norvegicus] 31 7.5
gb|EAA29171.1| hypothetical protein [Neurospora crassa] 31 7.5
ref|NP_761878.1| ABC-type dipeptide/oligopeptide/nickel transpor... 31 9.8
>pir||QQBEF6 HVLF4 protein - human cytomegalovirus (strain AD169)
Length = 328
Score = 31.6 bits (70), Expect = 5.7
Identities = 21/82 (25%), Positives = 43/82 (51%), Gaps = 5/82 (6%)
Frame = -3
Query: 234 VFMHSFWSCTVLQIKAKLLQHAATWYY*IALCILECF---ILALLSPPIRITLSELRPSY 64
V+ + ++ T+L + +L TW + LC+ F ILA+L +R +++ S+
Sbjct: 198 VWRDALFTSTLLTVMVSVLASTYTWLHKTLLCLYTVFVGCILAVLFQDVRYIATKMPVSH 257
Query: 63 VTCSYNII--SEVFIFNQSLIL 4
V S I+ +E I++ +L++
Sbjct: 258 VIRSSLILYATETLIYHTTLLM 279
>ref|NP_040099.1| US14 [Human herpesvirus 5] gi|137146|sp|P09719|US14_HCMVA
HYPOTHETICAL PROTEIN HVLF4 gi|1780945|emb|CAA35281.1|
US12 FAMILY [Human herpesvirus 5]
gi|4456187|emb|CAB37106.1| HVLF4 reading frame (family
3) [Human herpesvirus 5] gi|27808832|tpg|DAA00202.1|
TPA: US14 [Human herpesvirus 5]
Length = 310
Score = 31.6 bits (70), Expect = 5.7
Identities = 21/82 (25%), Positives = 43/82 (51%), Gaps = 5/82 (6%)
Frame = -3
Query: 234 VFMHSFWSCTVLQIKAKLLQHAATWYY*IALCILECF---ILALLSPPIRITLSELRPSY 64
V+ + ++ T+L + +L TW + LC+ F ILA+L +R +++ S+
Sbjct: 180 VWRDALFTSTLLTVMVSVLASTYTWLHKTLLCLYTVFVGCILAVLFQDVRYIATKMPVSH 239
Query: 63 VTCSYNII--SEVFIFNQSLIL 4
V S I+ +E I++ +L++
Sbjct: 240 VIRSSLILYATETLIYHTTLLM 261
>ref|XP_241767.1| hypothetical protein XP_241767 [Rattus norvegicus]
Length = 458
Score = 31.2 bits (69), Expect = 7.5
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +1
Query: 145 CNSIVPCSCMLQ*LGLNLKHSATPK*MHKYITKIFEPYS*FQL--L*RSKSL*QRNVATC 318
C+S+ C C+LQ N + + HK+++ F+ Y FQ+ + +SL Q+ +A C
Sbjct: 56 CDSLCLCLCLLQQAMCNGQGDEISRGSHKWLSAKFQNYKRFQMDSKVKGQSLQQQRLAAC 115
>gb|EAA29171.1| hypothetical protein [Neurospora crassa]
Length = 1318
Score = 31.2 bits (69), Expect = 7.5
Identities = 20/60 (33%), Positives = 30/60 (49%)
Frame = +2
Query: 335 FTQL*R*FVHHIGCICLFLTWVLFCAGKWRDYSENYFKRFTIVLSLVFLSLVSRIRQRSM 514
FT+L F H + F + +FC G W Y+ FT+ + +VF S V RQR++
Sbjct: 193 FTEL---FKEH--AVAPFFVFQVFCVGLWMLDEYWYYSLFTLFMLVVFESTVVWQRQRTL 247
>ref|NP_761878.1| ABC-type dipeptide/oligopeptide/nickel transport system, permease
component [Vibrio vulnificus CMCP6]
gi|27362551|gb|AAO11405.1|AE016807_124 ABC-type
dipeptide/oligopeptide/nickel transport system, permease
component [Vibrio vulnificus CMCP6]
Length = 306
Score = 30.8 bits (68), Expect = 9.8
Identities = 21/54 (38%), Positives = 28/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 356 FVHHIGCICLF-LTWVLFCAGKWRDYSENYFKRFTIVLSLVFLSLVSRIRQRSM 514
FV I LF L W LF AG W D Y I +SL++++ +RI + SM
Sbjct: 144 FVLAPALIYLFALHWDLFPAGGWHDGGLKYLVLPVIGMSLLYVATFARITRGSM 197
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 394,117,354
Number of Sequences: 1393205
Number of extensions: 7550863
Number of successful extensions: 14560
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14560
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
