Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013912A_C01 KMC013912A_c01
(466 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC87810.2| Tic62 protein [Pisum sativum] 115 3e-25
gb|AAN72050.1| Unknown protein [Arabidopsis thaliana] 69 2e-11
dbj|BAB03098.1| gb|AAC26697.1~gene_id:MCB22.6~similar to unknown... 69 2e-11
ref|NP_188519.1| hypothetical protein; protein id: At3g18890.1 [... 65 3e-10
ref|NP_567209.1| expressed protein; protein id: At4g01050.1, sup... 53 1e-06
>emb|CAC87810.2| Tic62 protein [Pisum sativum]
Length = 534
Score = 115 bits (287), Expect = 3e-25
Identities = 61/97 (62%), Positives = 66/97 (67%), Gaps = 1/97 (1%)
Frame = -3
Query: 452 SPDSNSSNSPYPVYSDFKPPTSPSPNAPNTSTSKSAVDVVPEMDAASSNGPAQLSIADES 273
S S SPY Y D KPP+SPSP+ P TS SK VV SSNGPAQLS+ D
Sbjct: 444 SSKGKESLSPYAAYPDLKPPSSPSPSVPTTSLSKRDTVVV------SSNGPAQLSVEDTP 497
Query: 272 KDEE-HAPEPKSRPLSPYTMYEDLKPPTSPTPSFRKS 165
K+EE H EPKSRPLSPY MYEDLKPP SP+PSFRKS
Sbjct: 498 KNEEQHLHEPKSRPLSPYAMYEDLKPPASPSPSFRKS 534
Score = 45.1 bits (105), Expect = 4e-04
Identities = 25/72 (34%), Positives = 37/72 (50%), Gaps = 1/72 (1%)
Frame = -3
Query: 389 SPSPNAPNTSTSKSAVDVVPEMDAASSNGPAQLSIADESKDEEHAPEPKS-RPLSPYTMY 213
S P P+ + A S+N A++ K+ P K+ +PLSPYT Y
Sbjct: 335 SQRPYIPSPKKVQKADTATVSNTGPSANVVAEVPSIAPQKETASKPVAKTEQPLSPYTAY 394
Query: 212 EDLKPPTSPTPS 177
+DLKPP+SP+P+
Sbjct: 395 DDLKPPSSPSPT 406
>gb|AAN72050.1| Unknown protein [Arabidopsis thaliana]
Length = 641
Score = 68.9 bits (167), Expect = 2e-11
Identities = 37/103 (35%), Positives = 52/103 (49%), Gaps = 19/103 (18%)
Frame = -3
Query: 428 SPYPVYSDFKPPTSPSPNAPNTSTSKSAVD--------------VVPEMDAASSNGPAQL 291
SPY +Y+D KPPTSP+P + + S D V ++ + P +
Sbjct: 534 SPYAIYADLKPPTSPTPASTGPKEAASVEDNSELPGGNNDVLKTVDGNLNTIPPSTPEAV 593
Query: 290 SIADESKDE-----EHAPEPKSRPLSPYTMYEDLKPPTSPTPS 177
+ + D ++ +PK RPLSPYTMY D+KPPTSP PS
Sbjct: 594 PVVSSAIDTSLASGDNTAQPKPRPLSPYTMYADMKPPTSPLPS 636
Score = 65.5 bits (158), Expect = 3e-10
Identities = 46/114 (40%), Positives = 59/114 (51%), Gaps = 14/114 (12%)
Frame = -3
Query: 464 EKNPSPDSNSSNSPYPVYSDFKPPTSPSPNAPNT-STSKSA----------VDVVPEMDA 318
EKN P SPY Y D KPPTSP PN+ + S +KS +VVP D+
Sbjct: 369 EKNVKP---RPLSPYASYEDLKPPTSPIPNSTTSVSPAKSKEVDATQVPVEANVVPVPDS 425
Query: 317 ASSNGPAQLSIADESKDEEHAPEPKSRPLSPYTMYEDLKPPTSPTP---SFRKS 165
S+ ++ +E K+ RPLSPY YE+LKPP+SP+P S RKS
Sbjct: 426 TSNVPVVEVKQVEEKKE---------RPLSPYARYENLKPPSSPSPTASSTRKS 470
Score = 63.5 bits (153), Expect = 1e-09
Identities = 41/106 (38%), Positives = 51/106 (47%), Gaps = 22/106 (20%)
Frame = -3
Query: 428 SPYPVYSDFKPPTSPSPNAPNT-------------STSKSAVDVVPEMDAASSNGPAQLS 288
SPY Y + KPP+SPSP A +T T KS+ + A + + S
Sbjct: 446 SPYARYENLKPPSSPSPTASSTRKSDSLSPGPTDSDTDKSSTVAKTVTETAVATSVTETS 505
Query: 287 IADE--------SKDEEHAPEP-KSRPLSPYTMYEDLKPPTSPTPS 177
+A S E AP K RPLSPY +Y DLKPPTSPTP+
Sbjct: 506 VATSVPETAVATSVTETAAPATSKMRPLSPYAIYADLKPPTSPTPA 551
Score = 46.2 bits (108), Expect = 2e-04
Identities = 28/74 (37%), Positives = 36/74 (47%), Gaps = 3/74 (4%)
Frame = -3
Query: 389 SPSPNAPNTSTSKSAVDVVPEMDAASSNGPAQLSIADESKDEEHAPEPKS---RPLSPYT 219
S P P S + +V P + P K++E P+ K+ RPLSPY
Sbjct: 328 SKRPYVPPPKASVATKEVKPVPTKPVTQEPTA------PKEDEAPPKEKNVKPRPLSPYA 381
Query: 218 MYEDLKPPTSPTPS 177
YEDLKPPTSP P+
Sbjct: 382 SYEDLKPPTSPIPN 395
>dbj|BAB03098.1| gb|AAC26697.1~gene_id:MCB22.6~similar to unknown protein
[Arabidopsis thaliana]
Length = 649
Score = 68.9 bits (167), Expect = 2e-11
Identities = 37/103 (35%), Positives = 52/103 (49%), Gaps = 19/103 (18%)
Frame = -3
Query: 428 SPYPVYSDFKPPTSPSPNAPNTSTSKSAVD--------------VVPEMDAASSNGPAQL 291
SPY +Y+D KPPTSP+P + + S D V ++ + P +
Sbjct: 542 SPYAIYADLKPPTSPTPASTGPKEAASVEDNSELPGGNNDVLKTVDGNLNTIPPSTPEAV 601
Query: 290 SIADESKDE-----EHAPEPKSRPLSPYTMYEDLKPPTSPTPS 177
+ + D ++ +PK RPLSPYTMY D+KPPTSP PS
Sbjct: 602 PVVSSAIDTSLASGDNTAQPKPRPLSPYTMYADMKPPTSPLPS 644
Score = 65.5 bits (158), Expect = 3e-10
Identities = 46/114 (40%), Positives = 59/114 (51%), Gaps = 14/114 (12%)
Frame = -3
Query: 464 EKNPSPDSNSSNSPYPVYSDFKPPTSPSPNAPNT-STSKSA----------VDVVPEMDA 318
EKN P SPY Y D KPPTSP PN+ + S +KS +VVP D+
Sbjct: 377 EKNVKP---RPLSPYASYEDLKPPTSPIPNSTTSVSPAKSKEVDATQVPVEANVVPVPDS 433
Query: 317 ASSNGPAQLSIADESKDEEHAPEPKSRPLSPYTMYEDLKPPTSPTP---SFRKS 165
S+ ++ +E K+ RPLSPY YE+LKPP+SP+P S RKS
Sbjct: 434 TSNVPVVEVKQVEEKKE---------RPLSPYARYENLKPPSSPSPTASSTRKS 478
Score = 63.5 bits (153), Expect = 1e-09
Identities = 41/106 (38%), Positives = 51/106 (47%), Gaps = 22/106 (20%)
Frame = -3
Query: 428 SPYPVYSDFKPPTSPSPNAPNT-------------STSKSAVDVVPEMDAASSNGPAQLS 288
SPY Y + KPP+SPSP A +T T KS+ + A + + S
Sbjct: 454 SPYARYENLKPPSSPSPTASSTRKSDSLSPGPTDSDTDKSSTVAKTVTETAVATSVTETS 513
Query: 287 IADE--------SKDEEHAPEP-KSRPLSPYTMYEDLKPPTSPTPS 177
+A S E AP K RPLSPY +Y DLKPPTSPTP+
Sbjct: 514 VATSVPETAVATSVTETAAPATSKMRPLSPYAIYADLKPPTSPTPA 559
Score = 46.2 bits (108), Expect = 2e-04
Identities = 28/74 (37%), Positives = 36/74 (47%), Gaps = 3/74 (4%)
Frame = -3
Query: 389 SPSPNAPNTSTSKSAVDVVPEMDAASSNGPAQLSIADESKDEEHAPEPKS---RPLSPYT 219
S P P S + +V P + P K++E P+ K+ RPLSPY
Sbjct: 336 SKRPYVPPPKASVATKEVKPVPTKPVTQEPTA------PKEDEAPPKEKNVKPRPLSPYA 389
Query: 218 MYEDLKPPTSPTPS 177
YEDLKPPTSP P+
Sbjct: 390 SYEDLKPPTSPIPN 403
>ref|NP_188519.1| hypothetical protein; protein id: At3g18890.1 [Arabidopsis
thaliana]
Length = 623
Score = 65.5 bits (158), Expect = 3e-10
Identities = 46/114 (40%), Positives = 59/114 (51%), Gaps = 14/114 (12%)
Frame = -3
Query: 464 EKNPSPDSNSSNSPYPVYSDFKPPTSPSPNAPNT-STSKSA----------VDVVPEMDA 318
EKN P SPY Y D KPPTSP PN+ + S +KS +VVP D+
Sbjct: 369 EKNVKP---RPLSPYASYEDLKPPTSPIPNSTTSVSPAKSKEVDATQVPVEANVVPVPDS 425
Query: 317 ASSNGPAQLSIADESKDEEHAPEPKSRPLSPYTMYEDLKPPTSPTP---SFRKS 165
S+ ++ +E K+ RPLSPY YE+LKPP+SP+P S RKS
Sbjct: 426 TSNVPVVEVKQVEEKKE---------RPLSPYARYENLKPPSSPSPTASSTRKS 470
Score = 63.5 bits (153), Expect = 1e-09
Identities = 41/106 (38%), Positives = 51/106 (47%), Gaps = 22/106 (20%)
Frame = -3
Query: 428 SPYPVYSDFKPPTSPSPNAPNT-------------STSKSAVDVVPEMDAASSNGPAQLS 288
SPY Y + KPP+SPSP A +T T KS+ + A + + S
Sbjct: 446 SPYARYENLKPPSSPSPTASSTRKSDSLSPGPTDSDTDKSSTVAKTVTETAVATSVTETS 505
Query: 287 IADE--------SKDEEHAPEP-KSRPLSPYTMYEDLKPPTSPTPS 177
+A S E AP K RPLSPY +Y DLKPPTSPTP+
Sbjct: 506 VATSVPETAVATSVTETAAPATSKMRPLSPYAIYADLKPPTSPTPA 551
Score = 46.2 bits (108), Expect = 2e-04
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 19/90 (21%)
Frame = -3
Query: 428 SPYPVYSDFKPPTSPSPNAPNTSTSKSAVD--------------VVPEMDAASSNGPAQL 291
SPY +Y+D KPPTSP+P + + S D V ++ + P +
Sbjct: 534 SPYAIYADLKPPTSPTPASTGPKEAASVEDNSELPGGNNDVLKTVDGNLNTIPPSTPEAV 593
Query: 290 SIADESKDE-----EHAPEPKSRPLSPYTM 216
+ + D ++ +PK RPLSPYTM
Sbjct: 594 PVVSSAIDTSLASGDNTAQPKPRPLSPYTM 623
Score = 46.2 bits (108), Expect = 2e-04
Identities = 28/74 (37%), Positives = 36/74 (47%), Gaps = 3/74 (4%)
Frame = -3
Query: 389 SPSPNAPNTSTSKSAVDVVPEMDAASSNGPAQLSIADESKDEEHAPEPKS---RPLSPYT 219
S P P S + +V P + P K++E P+ K+ RPLSPY
Sbjct: 328 SKRPYVPPPKASVATKEVKPVPTKPVTQEPTA------PKEDEAPPKEKNVKPRPLSPYA 381
Query: 218 MYEDLKPPTSPTPS 177
YEDLKPPTSP P+
Sbjct: 382 SYEDLKPPTSPIPN 395
>ref|NP_567209.1| expressed protein; protein id: At4g01050.1, supported by cDNA:
gi_15982914, supported by cDNA: gi_16323193 [Arabidopsis
thaliana] gi|15982915|gb|AAL09804.1| AT4g01050/F2N1_31
[Arabidopsis thaliana] gi|16323194|gb|AAL15331.1|
AT4g01050/F2N1_31 [Arabidopsis thaliana]
gi|21700911|gb|AAM70579.1| AT4g01050/F2N1_31
[Arabidopsis thaliana]
Length = 466
Score = 53.1 bits (126), Expect = 1e-06
Identities = 31/79 (39%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Frame = -3
Query: 401 KPPTSPSPNAPNTSTSKSAV---DVVPE-MDAASSNGPAQLSIADESKDEEHAPEPKSRP 234
KP P A T+T V + VPE + + + E + E P+P SRP
Sbjct: 386 KPVPEPETVAATTTTVDKPVPEPEPVPEPVPVPAIEAAVAAQVITEPTETEAKPKPHSRP 445
Query: 233 LSPYTMYEDLKPPTSPTPS 177
LSPY Y DLKPP+SP PS
Sbjct: 446 LSPYASYPDLKPPSSPMPS 464
Score = 34.3 bits (77), Expect = 0.66
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = -3
Query: 464 EKNPSPDSNSSNSPYPVYSDFKPPTSPSPNAP 369
E P P S SPY Y D KPP+SP P+ P
Sbjct: 436 EAKPKPHSRPL-SPYASYPDLKPPSSPMPSQP 466
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 424,898,039
Number of Sequences: 1393205
Number of extensions: 9635429
Number of successful extensions: 50142
Number of sequences better than 10.0: 847
Number of HSP's better than 10.0 without gapping: 39103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46893
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 12291312054
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
