Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013897A_C01 KMC013897A_c01
(550 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190919.1| ABC transporter family protein; protein id: At3... 142 3e-33
ref|NP_196862.1| ABC transporter family protein; protein id: At5... 137 7e-32
dbj|BAC42186.1| putative ABC transporter [Arabidopsis thaliana] 137 9e-32
ref|NP_181272.1| ABC transporter family protein; protein id: At2... 137 9e-32
ref|NP_191069.1| ABC transporter family protein; protein id: At3... 135 2e-31
>ref|NP_190919.1| ABC transporter family protein; protein id: At3g53510.1
[Arabidopsis thaliana] gi|11277383|pir||T45891 ABC
transporter-like protein - Arabidopsis thaliana
gi|6729502|emb|CAB67658.1| ABC transporter-like protein
[Arabidopsis thaliana]
Length = 739
Score = 142 bits (357), Expect = 3e-33
Identities = 66/109 (60%), Positives = 81/109 (73%)
Frame = -1
Query: 550 LVKYPYEAVLQNEFDDPVKCFVRGVQIFDNSPLRSVPYELKLKLLGSMSGTLGTDITATT 371
LVKYPYE VLQNEF+DP KCFVRG+Q+FDNSPL VP +K+ LL SMSG LG ++TA T
Sbjct: 630 LVKYPYEGVLQNEFEDPTKCFVRGIQMFDNSPLGQVPTAVKISLLKSMSGVLGINVTAET 689
Query: 370 CLTTGADILQQNGVTELS*WNCLWITVRLGILLQVFVLLGFVSG*QDTR 224
C+TTG DIL+Q G+TE+S WNCLWITV G +V + G ++ R
Sbjct: 690 CVTTGIDILKQQGITEISKWNCLWITVAWGFFFRVLFYFTLLIGSKNKR 738
>ref|NP_196862.1| ABC transporter family protein; protein id: At5g13580.1
[Arabidopsis thaliana] gi|9758023|dbj|BAB08684.1| ABC
transporter-like protein [Arabidopsis thaliana]
gi|28392996|gb|AAO41933.1| putative ABC transporter
family protein [Arabidopsis thaliana]
gi|28827290|gb|AAO50489.1| putative ABC transporter
family protein [Arabidopsis thaliana]
Length = 727
Score = 137 bits (346), Expect = 7e-32
Identities = 65/109 (59%), Positives = 82/109 (74%)
Frame = -1
Query: 550 LVKYPYEAVLQNEFDDPVKCFVRGVQIFDNSPLRSVPYELKLKLLGSMSGTLGTDITATT 371
LVKYPYEAVL NEF DP KCFVRGVQIFDN+PL +VP +K++LL +MS +LG IT++T
Sbjct: 618 LVKYPYEAVLLNEFGDPTKCFVRGVQIFDNTPLVAVPQGMKVRLLATMSKSLGMRITSST 677
Query: 370 CLTTGADILQQNGVTELS*WNCLWITVRLGILLQVFVLLGFVSG*QDTR 224
CLTTG DILQQ GVT+L+ WNCLW+TV G ++ + G ++ R
Sbjct: 678 CLTTGYDILQQQGVTDLTKWNCLWVTVAWGFFFRILFYFSLLLGSKNKR 726
>dbj|BAC42186.1| putative ABC transporter [Arabidopsis thaliana]
Length = 270
Score = 137 bits (345), Expect = 9e-32
Identities = 63/109 (57%), Positives = 80/109 (72%)
Frame = -1
Query: 550 LVKYPYEAVLQNEFDDPVKCFVRGVQIFDNSPLRSVPYELKLKLLGSMSGTLGTDITATT 371
LVKYPYE VLQNEF +P +CF RGVQ+FDNSPL P ++K+ LL SMSG LGT++TA T
Sbjct: 161 LVKYPYEGVLQNEFQNPTRCFARGVQLFDNSPLGEFPNDVKVNLLKSMSGVLGTNVTAET 220
Query: 370 CLTTGADILQQNGVTELS*WNCLWITVRLGILLQVFVLLGFVSG*QDTR 224
C+TTG DIL+Q G+T++S WNCLWITV G +V + G ++ R
Sbjct: 221 CVTTGIDILKQQGITDISKWNCLWITVAWGFFFRVLFYFTLLIGSKNKR 269
>ref|NP_181272.1| ABC transporter family protein; protein id: At2g37360.1
[Arabidopsis thaliana] gi|25297511|pir||G84791 probable
ABC transporter [imported] - Arabidopsis thaliana
gi|4056489|gb|AAC98055.1| putative ABC transporter
[Arabidopsis thaliana]
Length = 755
Score = 137 bits (345), Expect = 9e-32
Identities = 63/109 (57%), Positives = 80/109 (72%)
Frame = -1
Query: 550 LVKYPYEAVLQNEFDDPVKCFVRGVQIFDNSPLRSVPYELKLKLLGSMSGTLGTDITATT 371
LVKYPYE VLQNEF +P +CF RGVQ+FDNSPL P ++K+ LL SMSG LGT++TA T
Sbjct: 646 LVKYPYEGVLQNEFQNPTRCFARGVQLFDNSPLGEFPNDVKVNLLKSMSGVLGTNVTAET 705
Query: 370 CLTTGADILQQNGVTELS*WNCLWITVRLGILLQVFVLLGFVSG*QDTR 224
C+TTG DIL+Q G+T++S WNCLWITV G +V + G ++ R
Sbjct: 706 CVTTGIDILKQQGITDISKWNCLWITVAWGFFFRVLFYFTLLIGSKNKR 754
>ref|NP_191069.1| ABC transporter family protein; protein id: At3g55090.1
[Arabidopsis thaliana] gi|11277384|pir||T47648 ABC
transporter-like protein - Arabidopsis thaliana
gi|7329639|emb|CAB82704.1| ABC transporter-like protein
[Arabidopsis thaliana]
Length = 720
Score = 135 bits (341), Expect = 2e-31
Identities = 65/109 (59%), Positives = 84/109 (76%)
Frame = -1
Query: 550 LVKYPYEAVLQNEFDDPVKCFVRGVQIFDNSPLRSVPYELKLKLLGSMSGTLGTDITATT 371
LVKYPYEAVLQNEF DP +CFVRGVQ+FDNSPL + Y +KL+LL S+S ++G I+++T
Sbjct: 611 LVKYPYEAVLQNEFSDPTECFVRGVQLFDNSPLGELTYGMKLRLLDSVSRSIGMRISSST 670
Query: 370 CLTTGADILQQNGVTELS*WNCLWITVRLGILLQVFVLLGFVSG*QDTR 224
CLTTGAD+L+Q GVT+LS WNCL ITV G L ++ L + G ++ R
Sbjct: 671 CLTTGADVLKQQGVTQLSKWNCLLITVGFGFLFRILFYLCLLLGSKNKR 719
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 463,094,396
Number of Sequences: 1393205
Number of extensions: 10010795
Number of successful extensions: 31114
Number of sequences better than 10.0: 102
Number of HSP's better than 10.0 without gapping: 28217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30692
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
