Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013879A_C01 KMC013879A_c01
(736 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_146710.1| similar to olfactory receptor MOR161-2 [Mus mus... 40 0.034
ref|NP_781460.1| hypothetical protein [Clostridium tetani E88] g... 39 0.099
ref|NP_666960.1| olfactory receptor MOR161-4 [Mus musculus] gi|1... 38 0.17
pir||S29709 olfactory receptor OR14 - rat 37 0.29
ref|NP_667093.1| olfactory receptor MOR161-2 [Mus musculus] gi|1... 37 0.29
>ref|XP_146710.1| similar to olfactory receptor MOR161-2 [Mus musculus]
Length = 989
Score = 40.0 bits (92), Expect = 0.034
Identities = 43/162 (26%), Positives = 78/162 (47%), Gaps = 11/162 (6%)
Frame = -1
Query: 679 SVVPASLSRSGGVTRSNVLSPLPLV*FSISG*ITQCFFFPFFLF-----LSVRSMVRHIE 515
+++P L+ ++++N++S SG +TQ FFF FF+F LS + R++
Sbjct: 450 TIIPKMLTSF--ISKTNIISH--------SGCMTQLFFFCFFVFSESFILSAMAYDRYVA 499
Query: 514 ILHFLIVVVHFFPSIVLYYLVLVCFLKF----AYTHVLMKLC-CILSMASHSGSTSTGHV 350
I + L+ V P + L L+ V + F A+T LM L C ++ +H +
Sbjct: 500 ICNPLMYTVTMSPQVCLLLLLGVYVMGFSGGIAHTGNLMNLTFCADNLINHFMCDILPLL 559
Query: 349 WLCSSCKFISRYYILVLQYL*VYSSPIS-FISLSLLMSLILH 227
L S F + + ++ + ++ FIS +L++S ILH
Sbjct: 560 ELSCSNTFTNELVVFIVVAFGIGVPIVTIFISYALILSSILH 601
Score = 37.0 bits (84), Expect = 0.29
Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 11/149 (7%)
Frame = -1
Query: 643 VTRSNVLSPLPLV*FSISG*ITQCFFFPFFL-----FLSVRSMVRHIEILHFLIVVVHFF 479
++R N++S SG +TQ FFF FF+ LS + R++ I + L+ V
Sbjct: 85 ISRKNIISH--------SGCMTQLFFFCFFVVSESFILSAMAYDRYVAICNPLMYTVTMS 136
Query: 478 PSIVLYYLVLVCFLKF----AYTHVLMKLC-CILSMASHSGSTSTGHVWLCSSCKFISRY 314
P + L L+ V + F A+T LM L C ++ +H + L + FI+
Sbjct: 137 PQVYLLLLLGVYVMGFSGAMAHTGNLMNLTFCADNLINHFMCDILPLLELSCNSTFINEL 196
Query: 313 YILVLQYL*VYSSPIS-FISLSLLMSLIL 230
I ++ + ++ FIS +L++S IL
Sbjct: 197 VIFIVVAFDIGVPIVTIFISYALILSSIL 225
>ref|NP_781460.1| hypothetical protein [Clostridium tetani E88]
gi|28202953|gb|AAO35397.1| hypothetical protein
[Clostridium tetani E88]
Length = 198
Score = 38.5 bits (88), Expect = 0.099
Identities = 33/140 (23%), Positives = 63/140 (44%), Gaps = 17/140 (12%)
Frame = -1
Query: 508 HFLIVVVHFFPSIVLYYLVLVCFLKFAYTHVLMKLCCILSMASHSGSTSTGHVW------ 347
H L +V+ F P+ V +L KF Y +++ ILS++S + S ST +
Sbjct: 15 HLLYIVLFFLPTGVKLFLGNASLNKFIYYSMILFFNIILSISSLNESNSTINSLPVTRKE 74
Query: 346 -LCSSCKFISRYYILVLQYL*VYSSPISFISLSLLM----------SLILHGLFHSIIVH 200
+ S F + YI ++ +L + S+ + +I+ L++ +IL +II+
Sbjct: 75 IILSKFIFFNINYIFIIAFLYILSNLMHYINTDLIVFTLNIKDLFSLMILSNFVFTIIIF 134
Query: 199 CSWYF*MLMYCKFFAVFLMM 140
+ ML Y +F ++
Sbjct: 135 LYNLYIMLFYFSLIFIFFLV 154
>ref|NP_666960.1| olfactory receptor MOR161-4 [Mus musculus]
gi|18479990|gb|AAL61009.1| olfactory receptor MOR161-4
[Mus musculus]
Length = 310
Score = 37.7 bits (86), Expect = 0.17
Identities = 42/162 (25%), Positives = 78/162 (47%), Gaps = 11/162 (6%)
Frame = -1
Query: 679 SVVPASLSRSGGVTRSNVLSPLPLV*FSISG*ITQCFFFPFFLF-----LSVRSMVRHIE 515
+++P L+ ++++N++S SG +TQ FFF FF+F LS + R++
Sbjct: 75 TIIPKMLTSF--ISKTNIISH--------SGCMTQLFFFCFFVFSESFILSAMAYDRYVA 124
Query: 514 ILHFLIVVVHFFPSIVLYYLVLVCFLKF----AYTHVLMKLC-CILSMASHSGSTSTGHV 350
I + L+ V P + L L+ V + F A+T LM L C ++ +H +
Sbjct: 125 ICNPLMYTVTMSPQVCLLLLLGVYVMGFSGGIAHTGNLMNLTFCADNLINHFMCDILPLL 184
Query: 349 WLCSSCKFISRYYILVLQYL*VYSSPIS-FISLSLLMSLILH 227
L S F + + ++ + ++ FIS +L++S IL+
Sbjct: 185 ELSCSNTFTNELVVFIVVAFGIGVPIVTIFISYALILSSILY 226
>pir||S29709 olfactory receptor OR14 - rat
Length = 304
Score = 37.0 bits (84), Expect = 0.29
Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 11/134 (8%)
Frame = -1
Query: 598 SISG*ITQCFFFPFFL-----FLSVRSMVRHIEILHFLIVVVHFFPSIVLYYLVLVCFLK 434
S SG +TQ FFF FF+ LS + R++ I + L+ V P + L L+ +
Sbjct: 86 SHSGCMTQLFFFCFFVVSETFILSAMAYDRYVAICNPLMYTVTMSPQVCLLLLLGAYVMG 145
Query: 433 F----AYTHVLMKLC-CILSMASHSGSTSTGHVWLCSSCKFISRYYILVLQYL*VYSSPI 269
F A+T LM L C ++ +H + L + FI+ + ++ + + +
Sbjct: 146 FSEAMAHTGNLMNLTFCADNLVNHFMCDILPLLELSCNSTFINELVVFIVVAIDIAVPIV 205
Query: 268 S-FISLSLLMSLIL 230
S FIS +L++S IL
Sbjct: 206 SIFISYALILSSIL 219
>ref|NP_667093.1| olfactory receptor MOR161-2 [Mus musculus]
gi|18479714|gb|AAL60871.1| olfactory receptor MOR161-2
[Mus musculus]
Length = 310
Score = 37.0 bits (84), Expect = 0.29
Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 11/149 (7%)
Frame = -1
Query: 643 VTRSNVLSPLPLV*FSISG*ITQCFFFPFFL-----FLSVRSMVRHIEILHFLIVVVHFF 479
++R N++S SG +TQ FFF FF+ LS + R++ I + L+ V
Sbjct: 85 ISRKNIISH--------SGCMTQLFFFCFFVVSESFILSAMAYDRYVAICNPLMYTVTMS 136
Query: 478 PSIVLYYLVLVCFLKF----AYTHVLMKLC-CILSMASHSGSTSTGHVWLCSSCKFISRY 314
P + L L+ V + F A+T LM L C ++ +H + L + FI+
Sbjct: 137 PQVYLLLLLGVYVMGFSGAMAHTGNLMNLTFCADNLINHFMCDILPLLELSCNSTFINEL 196
Query: 313 YILVLQYL*VYSSPIS-FISLSLLMSLIL 230
I ++ + ++ FIS +L++S IL
Sbjct: 197 VIFIVVAFDIGVPIVTIFISYALILSSIL 225
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 622,246,314
Number of Sequences: 1393205
Number of extensions: 13869628
Number of successful extensions: 38495
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 36461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38429
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34906576228
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
