Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013871A_C01 KMC013871A_c01
(609 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB17667.1| PEX14 [Arabidopsis thaliana] 76 4e-13
emb|CAC14740.1| peroxin Pex14 [Arabidopsis thaliana] 76 4e-13
gb|AAM65879.1| unknown [Arabidopsis thaliana] 76 4e-13
ref|NP_680462.1| putative protein; protein id: At5g62810.1, supp... 74 1e-12
ref|NP_201087.2| putative protein; protein id: At5g62810.2 [Arab... 74 1e-12
>dbj|BAB17667.1| PEX14 [Arabidopsis thaliana]
Length = 507
Score = 75.9 bits (185), Expect = 4e-13
Identities = 57/165 (34%), Positives = 84/165 (50%), Gaps = 15/165 (9%)
Frame = -1
Query: 606 SNPRLAPRAKPWEVNQVQTNSTQVLQSQVNGKEFKIPESWSQTKNVRITE---------- 457
S+PR+AP++KPW+ Q + + NG+ W Q KN R T+
Sbjct: 360 SDPRIAPKSKPWDYGQAPQDESS------NGQ-------WWQQKNPRSTDFGYETTTAAR 406
Query: 456 -TDNVIEYNGAPAASSQQPVQRVWVPPQPPPVAMSAAAEAIRRPKP--IVPKESMTADQP 286
T N E + A+ Q+ QR WVPPQPPPVAM+ AAEAIRRPKP + +E+ +D
Sbjct: 407 FTANQNETSTMEPAAFQR--QRSWVPPQPPPVAMAEAAEAIRRPKPQAKIDQEAAASD-- 462
Query: 285 VTHSADISDGVEIISKSKSEGAIES--IRVNSLVSSGEIQGLNHE 157
+ +SD ++ I+K G S I++ + E Q ++ E
Sbjct: 463 --GQSGVSDELQKITKFSESGGDGSGGIKIAEIQEETEQQHISQE 505
>emb|CAC14740.1| peroxin Pex14 [Arabidopsis thaliana]
Length = 507
Score = 75.9 bits (185), Expect = 4e-13
Identities = 57/165 (34%), Positives = 84/165 (50%), Gaps = 15/165 (9%)
Frame = -1
Query: 606 SNPRLAPRAKPWEVNQVQTNSTQVLQSQVNGKEFKIPESWSQTKNVRITE---------- 457
S+PR+AP++KPW+ Q + + NG+ W Q KN R T+
Sbjct: 360 SDPRIAPKSKPWDYGQAPQDESS------NGQ-------WWQQKNPRSTDFGYETTTAAR 406
Query: 456 -TDNVIEYNGAPAASSQQPVQRVWVPPQPPPVAMSAAAEAIRRPKP--IVPKESMTADQP 286
T N E + A+ Q+ QR WVPPQPPPVAM+ AAEAIRRPKP + +E+ +D
Sbjct: 407 FTANQNETSTMEPAAFQR--QRSWVPPQPPPVAMAEAAEAIRRPKPQAKIDQEAAASD-- 462
Query: 285 VTHSADISDGVEIISKSKSEGAIES--IRVNSLVSSGEIQGLNHE 157
+ +SD ++ I+K G S I++ + E Q ++ E
Sbjct: 463 --GQSGVSDELQKITKFSESGGDGSGGIKIAEIQEETEQQHISQE 505
>gb|AAM65879.1| unknown [Arabidopsis thaliana]
Length = 252
Score = 75.9 bits (185), Expect = 4e-13
Identities = 57/165 (34%), Positives = 84/165 (50%), Gaps = 15/165 (9%)
Frame = -1
Query: 606 SNPRLAPRAKPWEVNQVQTNSTQVLQSQVNGKEFKIPESWSQTKNVRITE---------- 457
S+PR+AP++KPW+ Q + + NG+ W Q KN R T+
Sbjct: 105 SDPRIAPKSKPWDYGQAPQDESS------NGQ-------WWQQKNPRSTDFGYETTTAAR 151
Query: 456 -TDNVIEYNGAPAASSQQPVQRVWVPPQPPPVAMSAAAEAIRRPKP--IVPKESMTADQP 286
T N E + A+ Q+ QR WVPPQPPPVAM+ AAEAIRRPKP + +E+ +D
Sbjct: 152 FTANQNETSTMEPAAFQR--QRSWVPPQPPPVAMAEAAEAIRRPKPQAKIDQEAAASD-- 207
Query: 285 VTHSADISDGVEIISKSKSEGAIES--IRVNSLVSSGEIQGLNHE 157
+ +SD ++ I+K G S I++ + E Q ++ E
Sbjct: 208 --GQSGVSDELQKITKFSESGGDGSGGIKIAEIQEETEQQHISQE 250
>ref|NP_680462.1| putative protein; protein id: At5g62810.1, supported by cDNA:
gi_11094253 [Arabidopsis thaliana]
gi|10177459|dbj|BAB10850.1| gene_id:MQB2.13~unknown
protein [Arabidopsis thaliana]
gi|11094254|dbj|BAB17668.1| AtPex14p [Arabidopsis
thaliana]
Length = 507
Score = 74.3 bits (181), Expect = 1e-12
Identities = 56/165 (33%), Positives = 83/165 (49%), Gaps = 15/165 (9%)
Frame = -1
Query: 606 SNPRLAPRAKPWEVNQVQTNSTQVLQSQVNGKEFKIPESWSQTKNVRITE---------- 457
S+PR+AP++KPW+ Q + + NG+ W Q KN R T+
Sbjct: 360 SDPRIAPKSKPWDYGQAPQDESS------NGQ-------WWQQKNPRSTDFGYETTTAAR 406
Query: 456 -TDNVIEYNGAPAASSQQPVQRVWVPPQPPPVAMSAAAEAIRRPKP--IVPKESMTADQP 286
T N E + A+ Q+ QR WVPPQPPPVAM+ A EAIRRPKP + +E+ +D
Sbjct: 407 FTANQNETSTMEPAAFQR--QRSWVPPQPPPVAMAEAVEAIRRPKPQAKIDQEAAASD-- 462
Query: 285 VTHSADISDGVEIISKSKSEGAIES--IRVNSLVSSGEIQGLNHE 157
+ +SD ++ I+K G S I++ + E Q ++ E
Sbjct: 463 --GQSGVSDELQKITKFSESGGDGSGGIKIAEIQEETEQQHISQE 505
>ref|NP_201087.2| putative protein; protein id: At5g62810.2 [Arabidopsis thaliana]
Length = 252
Score = 74.3 bits (181), Expect = 1e-12
Identities = 56/165 (33%), Positives = 83/165 (49%), Gaps = 15/165 (9%)
Frame = -1
Query: 606 SNPRLAPRAKPWEVNQVQTNSTQVLQSQVNGKEFKIPESWSQTKNVRITE---------- 457
S+PR+AP++KPW+ Q + + NG+ W Q KN R T+
Sbjct: 105 SDPRIAPKSKPWDYGQAPQDESS------NGQ-------WWQQKNPRSTDFGYETTTAAR 151
Query: 456 -TDNVIEYNGAPAASSQQPVQRVWVPPQPPPVAMSAAAEAIRRPKP--IVPKESMTADQP 286
T N E + A+ Q+ QR WVPPQPPPVAM+ A EAIRRPKP + +E+ +D
Sbjct: 152 FTANQNETSTMEPAAFQR--QRSWVPPQPPPVAMAEAVEAIRRPKPQAKIDQEAAASD-- 207
Query: 285 VTHSADISDGVEIISKSKSEGAIES--IRVNSLVSSGEIQGLNHE 157
+ +SD ++ I+K G S I++ + E Q ++ E
Sbjct: 208 --GQSGVSDELQKITKFSESGGDGSGGIKIAEIQEETEQQHISQE 250
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 496,843,614
Number of Sequences: 1393205
Number of extensions: 10792963
Number of successful extensions: 42053
Number of sequences better than 10.0: 93
Number of HSP's better than 10.0 without gapping: 36536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41068
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
