Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013855A_C01 KMC013855A_c01
(592 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL65124.1| GT-2 factor [Glycine max] 44 0.001
gb|EAA15180.1| hypothetical protein [Plasmodium yoelii yoelii] 35 0.71
dbj|BAB27464.1| unnamed protein product [Mus musculus] 33 2.1
ref|NP_594244.1| very hypothetical protein [Schizosaccharomyces ... 33 2.7
ref|NP_702824.1| hypothetical protein [Plasmodium falciparum 3D7... 33 2.7
>gb|AAL65124.1| GT-2 factor [Glycine max]
Length = 355
Score = 44.3 bits (103), Expect = 0.001
Identities = 22/32 (68%), Positives = 25/32 (77%), Gaps = 2/32 (6%)
Frame = -1
Query: 592 DNDYDDKDIGDEDED--DEGTGKYEIVASKPA 503
+ D DK+IGDEDED DEG+ YEIVASKPA
Sbjct: 321 EEDEADKEIGDEDEDEDDEGSDNYEIVASKPA 352
>gb|EAA15180.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 212
Score = 35.0 bits (79), Expect = 0.71
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 6/118 (5%)
Frame = +2
Query: 89 KLKKKRKKQPPPQLIVSPIYTTLNIKKKSTATLSKVSSIIHFYGTSEV*TSPYLEFPSSS 268
KL K+ + +L + I+ + IKK +++SK F Y E SSS
Sbjct: 112 KLTKELDNKINDELGIQSIHDKIIIKKDENSSVSKHEDFKQFENDK------YNEITSSS 165
Query: 269 HQLIYLAQKIINYSFLKLKRKLKKHII------LLTICLLPFQIPQPLYPISFYMCII 424
NY LK R LKK +I L +I ++ IP P+Y ++ Y+ ++
Sbjct: 166 -----------NYKKLKTNRNLKKKVIKCILACLASIVIVLAVIPGPVYLMTLYILLL 212
>dbj|BAB27464.1| unnamed protein product [Mus musculus]
Length = 444
Score = 33.5 bits (75), Expect = 2.1
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Frame = -1
Query: 592 DNDYDDKDIGDEDEDDEGTGKYE---IVASKPA 503
D D +D+D DEDEDDEG ++E + KPA
Sbjct: 148 DEDEEDEDDSDEDEDDEGEDEFEPPIVKGVKPA 180
>ref|NP_594244.1| very hypothetical protein [Schizosaccharomyces pombe]
gi|7493615|pir||T37811 very hypothetical protein
SPAC17A2.10c - fission yeast (Schizosaccharomyces
pombe) gi|2414582|emb|CAB16563.1| very hypothetical
protein [Schizosaccharomyces pombe]
Length = 230
Score = 33.1 bits (74), Expect = 2.7
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = -2
Query: 114 CFFLFFFNLLFF*IILFLFSYSSNVSIIFVYLFQCF 7
C LFFF LLFF F FS+ +S IF+ F F
Sbjct: 115 CLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSF 150
>ref|NP_702824.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498240|emb|CAD49211.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 4605
Score = 33.1 bits (74), Expect = 2.7
Identities = 22/86 (25%), Positives = 46/86 (52%), Gaps = 4/86 (4%)
Frame = +2
Query: 215 YGTSEV*TSPYLE--FPSSSHQLIYLAQKIINYSFLKLKRKLKKHII--LLTICLLPFQI 382
YG++ ++ Y + S+++ L+ + NY+ K+K+K K ++I ++ ICLL
Sbjct: 1685 YGSNNYSSNNYSSNNYSSNNYSCNSLSPFLKNYNIKKIKKKNKINVIIYMMKICLLTKNC 1744
Query: 383 PQPLYPISFYMCIIKICNTLHHRHRR 460
+ I+ Y +KI N + H+ ++
Sbjct: 1745 AHEICSINSYNNNLKISNYVLHKKKK 1770
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 513,571,446
Number of Sequences: 1393205
Number of extensions: 12272825
Number of successful extensions: 68009
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 45631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64181
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
