Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013851A_C01 KMC013851A_c01
(591 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB08717.1| contains similarity to retroelement pol polyprot... 60 3e-08
ref|NP_179636.1| putative retroelement pol polyprotein; protein ... 55 7e-07
ref|NP_193182.1| retrovirus-related like polyprotein; protein id... 55 9e-07
ref|NP_683674.1| similar to putative retroelement pol polyprotei... 54 1e-06
ref|NP_192523.1| putative polyprotein; protein id: At4g07810.1 [... 54 1e-06
>dbj|BAB08717.1| contains similarity to retroelement pol polyprotein~gene_id:MOK9.20
[Arabidopsis thaliana]
Length = 813
Score = 59.7 bits (143), Expect = 3e-08
Identities = 30/88 (34%), Positives = 45/88 (51%)
Frame = -1
Query: 564 DRPICSHCGIPGHTAAKCFKLHAYPPGMKPKYKPSTHAVADPSSGTFQNAVTTLSPAPCN 385
++PICSHCG GHT KC+K+H YPP MK + T+ + + G ++ +P
Sbjct: 99 EKPICSHCGKVGHTVQKCYKVHGYPPDMKIGNQGYTYKMPHVTQGGNNLSLQDFTPQQIE 158
Query: 384 QLIQLLTNQLTTTSPDSVDVPESSGTKS 301
Q+I Q+ P++ SSG S
Sbjct: 159 QMISQFQAQVQVQEPEA-----SSGNPS 181
>ref|NP_179636.1| putative retroelement pol polyprotein; protein id: At2g20460.1
[Arabidopsis thaliana] gi|25301701|pir||E84589 probable
retroelement pol polyprotein [imported] - Arabidopsis
thaliana gi|4586028|gb|AAD25646.1| putative retroelement
pol polyprotein [Arabidopsis thaliana]
Length = 1461
Score = 55.1 bits (131), Expect = 7e-07
Identities = 37/107 (34%), Positives = 48/107 (44%), Gaps = 15/107 (14%)
Frame = -1
Query: 567 KDRPICSHCGIPGHTAAKCFKLHAYPPGMKPKYK-----PSTHAVA-------DPSSGTF 424
K RP CS C GH A +C+K H +PPG PK K P AVA D +G
Sbjct: 308 KGRPTCSFCNRVGHIAERCYKKHGFPPGFTPKGKSSDKPPKPQAVAAQVTLSPDKMTGQL 367
Query: 423 QNAVTTLSPAPCNQLIQLLTNQL--TTTSPDSVDVP-ESSGTKSGQP 292
+ SP LI L ++QL SP + E+S ++S P
Sbjct: 368 ETLAGNFSPDQIQNLIALFSSQLQPQIVSPQTASSQHEASSSQSVAP 414
>ref|NP_193182.1| retrovirus-related like polyprotein; protein id: At4g14460.1
[Arabidopsis thaliana] gi|7488175|pir||G71406 probable
retrovirus-related polyprotein - Arabidopsis thaliana
gi|2244802|emb|CAB10225.1| retrovirus-related like
polyprotein [Arabidopsis thaliana]
gi|7268152|emb|CAB78488.1| retrovirus-related like
polyprotein [Arabidopsis thaliana]
Length = 1489
Score = 54.7 bits (130), Expect = 9e-07
Identities = 23/46 (50%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Frame = -1
Query: 561 RPICSHCGIPGHTAAKCFKLHAYPPGMKP-----KYKPSTHAVADP 439
+PIC+HCG GHT KC+K+H YPPGMK YKP+ P
Sbjct: 283 KPICTHCGKVGHTIQKCYKVHGYPPGMKTGNTGYTYKPNPQLHVQP 328
>ref|NP_683674.1| similar to putative retroelement pol polyprotein; protein id:
At3g43955.1 [Arabidopsis thaliana]
Length = 1481
Score = 53.9 bits (128), Expect = 1e-06
Identities = 31/84 (36%), Positives = 42/84 (49%), Gaps = 9/84 (10%)
Frame = -1
Query: 576 N*KKDRPICSHCGIPGHTAAKCFKLHAYPPGMKPKYKPSTHAVADPSSGTFQNAVTTLSP 397
N K + ICSHCG GHT +C+K+H YP G K K K + S + + +V+T+ P
Sbjct: 291 NAKPQKVICSHCGYTGHTVDRCYKIHGYPLGFKHKNKNQS-----DKSVSLEKSVSTVKP 345
Query: 396 ---------APCNQLIQLLTNQLT 352
+ N LI LT LT
Sbjct: 346 VVAHMALTDSTTNDLINGLTKVLT 369
>ref|NP_192523.1| putative polyprotein; protein id: At4g07810.1 [Arabidopsis
thaliana] gi|25301678|pir||C85077 probable polyprotein
[imported] - Arabidopsis thaliana
gi|4325355|gb|AAD17352.1| contains similarity to
retrovirus-related polyproteins [Arabidopsis thaliana]
gi|7267379|emb|CAB77940.1| putative polyprotein
[Arabidopsis thaliana]
Length = 1366
Score = 53.9 bits (128), Expect = 1e-06
Identities = 19/30 (63%), Positives = 25/30 (83%)
Frame = -1
Query: 567 KDRPICSHCGIPGHTAAKCFKLHAYPPGMK 478
K RP+C++CG+ GHT A+C+KLH YPPG K
Sbjct: 237 KSRPLCTYCGLLGHTNARCYKLHGYPPGYK 266
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 487,572,413
Number of Sequences: 1393205
Number of extensions: 10337556
Number of successful extensions: 28655
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 27066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28616
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
