Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013845A_C01 KMC013845A_c01
(587 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565633.1| Argonaute (AGO1)-like protein; protein id: At2g... 203 1e-51
pir||A84668 Argonaute (AGO1)-like protein [imported] - Arabidops... 197 8e-50
ref|NP_197613.1| zwille/pinhead-like protein; protein id: At5g21... 185 3e-46
dbj|BAC42876.1| putative zwille/pinhead [Arabidopsis thaliana] 185 3e-46
emb|CAD66636.1| ARGONAUTE9 protein [Arabidopsis thaliana] 185 3e-46
>ref|NP_565633.1| Argonaute (AGO1)-like protein; protein id: At2g27040.1, supported
by cDNA: gi_14334815, supported by cDNA: gi_15293198
[Arabidopsis thaliana] gi|14334816|gb|AAK59586.1|
putative Argonaute (AGO1) protein [Arabidopsis thaliana]
gi|15293199|gb|AAK93710.1| putative argonaute AGO1
protein [Arabidopsis thaliana]
gi|20197419|gb|AAC77862.2| Argonaute (AGO1)-like protein
[Arabidopsis thaliana]
Length = 924
Score = 203 bits (517), Expect = 1e-51
Identities = 99/173 (57%), Positives = 128/173 (73%)
Frame = +1
Query: 67 NGKEESLPLPPPPPVLPSDVVPLKAEEVLPAAPPPEPVKKKTPARLPIARRGLGTKGTKI 246
NG + LPPPPPV+P +V P++ + L +KK P R+P+AR+G GT+G KI
Sbjct: 18 NGSGVTEALPPPPPVIPPNVEPVRVKTEL--------AEKKGPVRVPMARKGFGTRGQKI 69
Query: 247 PLLTNHFKVTCTNNDGHFFHYSVNFTYEDGRPVEGKGVGRKIMDKVQETYQSDLNGKDFA 426
PLLTNHFKV N GHFFHYSV Y+DGRPVE KGVGRKI+DKV +TY SDL+GK+FA
Sbjct: 70 PLLTNHFKVDVANLQGHFFHYSVALFYDDGRPVEQKGVGRKILDKVHQTYHSDLDGKEFA 129
Query: 427 YDGEKSLFTIGSLPRNKLEYEVVLEDVTSNRNNGNCSPPNGHGEDNETDKKRM 585
YDGEK+LFT G+LP NK+++ VVLE+V++ R NGN S PNG+ ++ D+KR+
Sbjct: 130 YDGEKTLFTYGALPSNKMDFSVVLEEVSATRANGNGS-PNGNESPSDGDRKRL 181
>pir||A84668 Argonaute (AGO1)-like protein [imported] - Arabidopsis thaliana
Length = 930
Score = 197 bits (501), Expect = 8e-50
Identities = 99/179 (55%), Positives = 129/179 (71%), Gaps = 6/179 (3%)
Frame = +1
Query: 67 NGKEESLPLPPPPPVLPSDVVPLKAEEVLPAAPPPEPVKKKTPARLPIARRGLGTKGTKI 246
NG + LPPPPPV+P +V P++ + L +KK P R+P+AR+G GT+G KI
Sbjct: 18 NGSGVTEALPPPPPVIPPNVEPVRVKTEL--------AEKKGPVRVPMARKGFGTRGQKI 69
Query: 247 PLLTNHFKVTCTNNDGHFFHYSVNFTYEDGRPVEGKGVGRKIMDKVQETYQSDLNGKDFA 426
PLLTNHFKV N GHFFHYSV Y+DGRPVE KGVGRKI+DKV +TY SDL+GK+FA
Sbjct: 70 PLLTNHFKVDVANLQGHFFHYSVALFYDDGRPVEQKGVGRKILDKVHQTYHSDLDGKEFA 129
Query: 427 YDGEKSLFTIGSLPRNKLEYEVVLEDVTS------NRNNGNCSPPNGHGEDNETDKKRM 585
YDGEK+LFT G+LP NK+++ VVLE+V++ +R NGN S PNG+ ++ D+KR+
Sbjct: 130 YDGEKTLFTYGALPSNKMDFSVVLEEVSATSKDFVSRANGNGS-PNGNESPSDGDRKRL 187
>ref|NP_197613.1| zwille/pinhead-like protein; protein id: At5g21150.1 [Arabidopsis
thaliana] gi|29294055|gb|AAO73892.1| PAZ (Piwi Argonaut
and Zwille) family [Arabidopsis thaliana]
Length = 892
Score = 185 bits (470), Expect = 3e-46
Identities = 102/181 (56%), Positives = 125/181 (68%), Gaps = 1/181 (0%)
Frame = +1
Query: 43 MDSFEPDGNGKEESLPLPPPPPVLPSDVVPLKAEEVLPAAPPPEPVKKKTPARLPIAR-R 219
MDS EP+G+G LPPPPP +P+++VP EV EPVKK LP+AR R
Sbjct: 1 MDSDEPNGSG------LPPPPPFVPANLVP----EV-------EPVKKNI--LLPMARPR 41
Query: 220 GLGTKGTKIPLLTNHFKVTCTNNDGHFFHYSVNFTYEDGRPVEGKGVGRKIMDKVQETYQ 399
G G+KG KIPLLTNHF V G+FFHYSV YEDGRPVE KG+GRKI+DKVQETYQ
Sbjct: 42 GSGSKGQKIPLLTNHFGVKFNKPSGYFFHYSVAINYEDGRPVEAKGIGRKILDKVQETYQ 101
Query: 400 SDLNGKDFAYDGEKSLFTIGSLPRNKLEYEVVLEDVTSNRNNGNCSPPNGHGEDNETDKK 579
SDL K FAYDGEK+LFT+G+LP NKL++ VVLE++ S+RN+ + N+ D+K
Sbjct: 102 SDLGAKYFAYDGEKTLFTVGALPSNKLDFSVVLEEIPSSRNHAG-------NDTNDADRK 154
Query: 580 R 582
R
Sbjct: 155 R 155
>dbj|BAC42876.1| putative zwille/pinhead [Arabidopsis thaliana]
Length = 304
Score = 185 bits (470), Expect = 3e-46
Identities = 102/181 (56%), Positives = 125/181 (68%), Gaps = 1/181 (0%)
Frame = +1
Query: 43 MDSFEPDGNGKEESLPLPPPPPVLPSDVVPLKAEEVLPAAPPPEPVKKKTPARLPIAR-R 219
MDS EP+G+G LPPPPP +P+++VP EV EPVKK LP+AR R
Sbjct: 1 MDSDEPNGSG------LPPPPPFVPANLVP----EV-------EPVKKNI--LLPMARPR 41
Query: 220 GLGTKGTKIPLLTNHFKVTCTNNDGHFFHYSVNFTYEDGRPVEGKGVGRKIMDKVQETYQ 399
G G+KG KIPLLTNHF V G+FFHYSV YEDGRPVE KG+GRKI+DKVQETYQ
Sbjct: 42 GSGSKGQKIPLLTNHFGVKFNKPSGYFFHYSVAINYEDGRPVEAKGIGRKILDKVQETYQ 101
Query: 400 SDLNGKDFAYDGEKSLFTIGSLPRNKLEYEVVLEDVTSNRNNGNCSPPNGHGEDNETDKK 579
SDL K FAYDGEK+LFT+G+LP NKL++ VVLE++ S+RN+ + N+ D+K
Sbjct: 102 SDLGAKYFAYDGEKTLFTVGALPSNKLDFSVVLEEIPSSRNHAG-------NDTNDADRK 154
Query: 580 R 582
R
Sbjct: 155 R 155
>emb|CAD66636.1| ARGONAUTE9 protein [Arabidopsis thaliana]
Length = 896
Score = 185 bits (470), Expect = 3e-46
Identities = 102/181 (56%), Positives = 125/181 (68%), Gaps = 1/181 (0%)
Frame = +1
Query: 43 MDSFEPDGNGKEESLPLPPPPPVLPSDVVPLKAEEVLPAAPPPEPVKKKTPARLPIAR-R 219
MDS EP+G+G LPPPPP +P+++VP EV EPVKK LP+AR R
Sbjct: 1 MDSDEPNGSG------LPPPPPFVPANLVP----EV-------EPVKKNI--LLPMARPR 41
Query: 220 GLGTKGTKIPLLTNHFKVTCTNNDGHFFHYSVNFTYEDGRPVEGKGVGRKIMDKVQETYQ 399
G G+KG KIPLLTNHF V G+FFHYSV YEDGRPVE KG+GRKI+DKVQETYQ
Sbjct: 42 GSGSKGQKIPLLTNHFGVKFNKPSGYFFHYSVAINYEDGRPVEAKGIGRKILDKVQETYQ 101
Query: 400 SDLNGKDFAYDGEKSLFTIGSLPRNKLEYEVVLEDVTSNRNNGNCSPPNGHGEDNETDKK 579
SDL K FAYDGEK+LFT+G+LP NKL++ VVLE++ S+RN+ + N+ D+K
Sbjct: 102 SDLGAKYFAYDGEKTLFTVGALPSNKLDFSVVLEEIPSSRNHAG-------NDTNDADRK 154
Query: 580 R 582
R
Sbjct: 155 R 155
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.315 0.138 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 559,735,851
Number of Sequences: 1393205
Number of extensions: 14439798
Number of successful extensions: 122209
Number of sequences better than 10.0: 1080
Number of HSP's better than 10.0 without gapping: 58467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102626
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
