Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013831A_C01 KMC013831A_c01
(556 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL24172.1| putative pectate lyase [Arabidopsis thaliana] gi|... 51 1e-05
ref|NP_191052.2| pectate lyase - like protein; protein id: At3g5... 45 8e-04
pir||T06728 pectate lyase (EC 4.2.2.2) F28P10.100 - Arabidopsis ... 43 0.003
ref|NP_196050.1| putative protein; protein id: At5g04300.1 [Arab... 39 0.056
gb|AAM61861.1|AF458662_1 calcium-dependent activator protein for... 38 0.073
>gb|AAL24172.1| putative pectate lyase [Arabidopsis thaliana]
gi|20466073|gb|AAM19958.1| At5g04300/At5g04300
[Arabidopsis thaliana]
Length = 349
Score = 50.8 bits (120), Expect = 1e-05
Identities = 35/83 (42%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Frame = -1
Query: 556 DQLPMYSGVFGDP---RDNGDLFPGF-NGGGTVT-GASIKGSSGGSSTSDDGD-FFGMIF 395
DQL + +GVFGDP G FPG NGGGT+T G S G +GG S SD D F +IF
Sbjct: 257 DQLTVNAGVFGDPSGRNGQGGSFPGITNGGGTITRGYSKSGPAGGGSGSDSDDGLFTLIF 316
Query: 394 KGSTSSQAPPSSPSSSIIIVSTL 326
++ + A SI+++ L
Sbjct: 317 GNNSGAVALRPGQVWSILLIIIL 339
>ref|NP_191052.2| pectate lyase - like protein; protein id: At3g54920.1, supported by
cDNA: gi_16604502, supported by cDNA: gi_20465768
[Arabidopsis thaliana] gi|16604503|gb|AAL24257.1|
AT3g54920/F28P10_100 [Arabidopsis thaliana]
gi|18377755|gb|AAL67027.1| putative pectate lyase
[Arabidopsis thaliana] gi|20465769|gb|AAM20373.1|
putative pectate lyase [Arabidopsis thaliana]
gi|22506901|gb|AAM97687.1| powdery mildew susceptibility
protein [Arabidopsis thaliana]
Length = 501
Score = 44.7 bits (104), Expect = 8e-04
Identities = 37/101 (36%), Positives = 52/101 (50%), Gaps = 18/101 (17%)
Frame = -1
Query: 556 DQLPMYSGVFGDPRD----NGDLFPGFNGGGTVTGASIKGSSGG-------------SST 428
DQL +GVFG PRD +G+ + + G G G S GSSGG SS+
Sbjct: 403 DQLTRNAGVFGGPRDDQGQSGNSYSPYGGDGG-GGGSSGGSSGGGMDVMGGTTRGSSSSS 461
Query: 427 SDDGDFFGMIFKGSTSSQAPPSSPSSSIIIVSTL-LSLLII 308
DD + F MIF GS + P + S++++S L LS L++
Sbjct: 462 GDDSNVFQMIF-GSDAPSRPRLTLLFSLLMISVLSLSTLLL 501
>pir||T06728 pectate lyase (EC 4.2.2.2) F28P10.100 - Arabidopsis thaliana
gi|4678301|emb|CAB41092.1| pectate lyase-like protein
[Arabidopsis thaliana]
Length = 542
Score = 42.7 bits (99), Expect = 0.003
Identities = 35/100 (35%), Positives = 47/100 (47%), Gaps = 17/100 (17%)
Frame = -1
Query: 556 DQLPMYSGVFGDPRD----NGDLFPGFNGGGTVTGASIKGSSGG-------------SST 428
DQL +GVFG PRD +G+ + + G G G S GSSGG SS+
Sbjct: 400 DQLTRNAGVFGGPRDDQGQSGNSYSPYGGDGG-GGGSSGGSSGGGMDVMGGTTRGSSSSS 458
Query: 427 SDDGDFFGMIFKGSTSSQAPPSSPSSSIIIVSTLLSLLII 308
DD + F MIF S AP + I + LL +++I
Sbjct: 459 GDDSNVFQMIF----GSDAPSRPRLTKICRMKKLLQVMLI 494
>ref|NP_196050.1| putative protein; protein id: At5g04300.1 [Arabidopsis thaliana]
Length = 92
Score = 38.5 bits (88), Expect = 0.056
Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Frame = -1
Query: 541 YSGVFGDPRDNGDLFPGF-NGGGTVT-GASIKGSSGGSSTSDDGD-FFGMIFKGSTSSQA 371
YSG G G FPG NGGGT+T G S G +GG S SD D F +IF ++ + A
Sbjct: 12 YSGRNGQ----GGSFPGITNGGGTITRGYSKSGPAGGGSGSDSDDGLFTLIFGNNSGAVA 67
Query: 370 PPSSPSSSIIIVSTL 326
SI+++ L
Sbjct: 68 LRPGQVWSILLIIIL 82
>gb|AAM61861.1|AF458662_1 calcium-dependent activator protein for secretion protein [Homo
sapiens]
Length = 1274
Score = 38.1 bits (87), Expect = 0.073
Identities = 19/51 (37%), Positives = 25/51 (48%)
Frame = -1
Query: 493 GFNGGGTVTGASIKGSSGGSSTSDDGDFFGMIFKGSTSSQAPPSSPSSSII 341
G GGG GA + S GG S + G G + S + PSSPS S++
Sbjct: 47 GLGGGGAGAGAGVGASGGGGSGASSGGGAGGLQPSSRAGGGRPSSPSPSVV 97
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 553,834,438
Number of Sequences: 1393205
Number of extensions: 13874294
Number of successful extensions: 73553
Number of sequences better than 10.0: 122
Number of HSP's better than 10.0 without gapping: 63434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72192
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
