Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013817A_C01 KMC013817A_c01
(510 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180813.1| putative cellulose synthase; protein id: At2g32... 105 3e-22
gb|AAL38531.1|AF435646_1 CSLH1 [Oryza sativa] 101 4e-21
emb|CAD41009.1| OSJNBa0042L16.7 [Oryza sativa (japonica cultivar... 100 2e-20
emb|CAD41008.1| OSJNBa0042L16.6 [Oryza sativa (japonica cultivar... 99 3e-20
pir||T02552 cellulose synthase homolog T26B15.9 - Arabidopsis th... 97 8e-20
>ref|NP_180813.1| putative cellulose synthase; protein id: At2g32540.1 [Arabidopsis
thaliana] gi|7484862|pir||T02553 cellulose synthase
homolog T26B15.10 - Arabidopsis thaliana
gi|3298542|gb|AAC25936.1| putative cellulose synthase
[Arabidopsis thaliana]
Length = 755
Score = 105 bits (262), Expect = 3e-22
Identities = 63/140 (45%), Positives = 82/140 (58%), Gaps = 11/140 (7%)
Frame = -3
Query: 496 LSVLLKLLGISDTIFEITKKDKPYSNDVNDDR-----------DAGRFTFDESLVFLPGT 350
L V+LKLLGIS T+F +TKK P + + + D+G+F FD SL FLPGT
Sbjct: 619 LDVILKLLGISKTVFIVTKKTMPETKSGSGSKKSQREVDCPNQDSGKFEFDGSLYFLPGT 678
Query: 349 TILLLQLTAMTFKLLGLQPSSTPSPSGKNGCGLGELFCCAYLIICFWPFLRGLFETGKYR 170
I+L+ L A+ L+GLQ G G GL E C ++I F PFL+G+FE GKY
Sbjct: 679 FIVLVNLAALAGCLVGLQSR------GGGGSGLAEACGCILVVILFLPFLKGMFEKGKYG 732
Query: 169 IPRSTVCKAATITFIFVHLS 110
IP ST+ KAA + +FV LS
Sbjct: 733 IPFSTLSKAAFLAALFVVLS 752
>gb|AAL38531.1|AF435646_1 CSLH1 [Oryza sativa]
Length = 743
Score = 101 bits (252), Expect = 4e-21
Identities = 57/134 (42%), Positives = 82/134 (60%), Gaps = 2/134 (1%)
Frame = -3
Query: 499 FLSVLLKLLGISDTIFEITKKDKPYSN-DVN-DDRDAGRFTFDESLVFLPGTTILLLQLT 326
FL+V+LK LG S+T+FE+T+KDK S+ D N D+ + GRFTFDES VF+P T + +L +
Sbjct: 611 FLTVILKTLGFSETVFEVTRKDKSTSDGDSNTDEPEPGRFTFDESTVFIPVTALAMLSVI 670
Query: 325 AMTFKLLGLQPSSTPSPSGKNGCGLGELFCCAYLIICFWPFLRGLFETGKYRIPRSTVCK 146
A+ + +T G G G+ E C +L++CF P LRGL +G+Y IP S K
Sbjct: 671 AIAVGAWRVVLVTTEGLPG--GPGISEFISCGWLVLCFMPLLRGLVGSGRYGIPWSIKMK 728
Query: 145 AATITFIFVHLSRR 104
A + IF+ +R
Sbjct: 729 ACLLVAIFLLFCKR 742
>emb|CAD41009.1| OSJNBa0042L16.7 [Oryza sativa (japonica cultivar-group)]
Length = 762
Score = 99.8 bits (247), Expect = 2e-20
Identities = 57/136 (41%), Positives = 84/136 (60%), Gaps = 4/136 (2%)
Frame = -3
Query: 499 FLSVLLKLLGISDTIFEITKKDKPYSNDVN--DDRDAGRFTFDESLVFLPGTTILLLQLT 326
FL+VLLK LG+S+T+FE+T KDK S+D + D D GRFTFD VF+P T + +L +
Sbjct: 629 FLTVLLKSLGLSETVFEVTGKDKSMSDDDDNTDGADPGRFTFDSLPVFIPVTALAMLNIV 688
Query: 325 AMTFKLLGLQPSSTPSPSG-KNGCGLGELFCCAYLIICFWPFLRGL-FETGKYRIPRSTV 152
A+T +G + + G G+GE CC +L++CF+PF+RG+ + G Y IP S
Sbjct: 689 AVT---VGACRVAFGTAEGVPCAPGIGEFMCCGWLVLCFFPFVRGIVWGKGSYGIPWSVK 745
Query: 151 CKAATITFIFVHLSRR 104
KA+ + +FV +R
Sbjct: 746 LKASLLVAMFVTFCKR 761
>emb|CAD41008.1| OSJNBa0042L16.6 [Oryza sativa (japonica cultivar-group)]
Length = 792
Score = 99.0 bits (245), Expect = 3e-20
Identities = 54/134 (40%), Positives = 78/134 (57%), Gaps = 2/134 (1%)
Frame = -3
Query: 499 FLSVLLKLLGISDTIFEITKKDKPYS--NDVNDDRDAGRFTFDESLVFLPGTTILLLQLT 326
F +VLLK +G+S+T+FE+T+K+K S N ND+ D RFTFD S VF+P T + +L +
Sbjct: 660 FFTVLLKTIGLSETVFEVTRKEKSTSDGNGQNDEVDPERFTFDASPVFIPVTALTMLNIV 719
Query: 325 AMTFKLLGLQPSSTPSPSGKNGCGLGELFCCAYLIICFWPFLRGLFETGKYRIPRSTVCK 146
A+T +T G G G+ E C +L++C PF+RGL G Y IP S K
Sbjct: 720 AITIGTWRAVFGTTEDVPG--GPGISEFMSCGWLLLCLLPFVRGLVGKGSYGIPWSVKLK 777
Query: 145 AATITFIFVHLSRR 104
A+ + +F+ S R
Sbjct: 778 ASLLVALFLFCSNR 791
>pir||T02552 cellulose synthase homolog T26B15.9 - Arabidopsis thaliana
gi|3298541|gb|AAC25935.1| putative cellulose synthase
[Arabidopsis thaliana]
Length = 712
Score = 97.4 bits (241), Expect = 8e-20
Identities = 59/138 (42%), Positives = 79/138 (56%), Gaps = 11/138 (7%)
Frame = -3
Query: 490 VLLKLLGISDTIFEITKKDKPYSNDVND-----------DRDAGRFTFDESLVFLPGTTI 344
++LKLLGIS T+F +TKK P + + ++D+G+F FD SL FLPGT I
Sbjct: 578 IILKLLGISKTVFIVTKKTMPKTMSGSGSEKSQREVDCPNQDSGKFEFDGSLYFLPGTFI 637
Query: 343 LLLQLTAMTFKLLGLQPSSTPSPSGKNGCGLGELFCCAYLIICFWPFLRGLFETGKYRIP 164
LL+ L A+ +GLQ G GL E C ++I F PFL+G+FE GKY IP
Sbjct: 638 LLVNLAALAGCSVGLQRHRG------GGSGLAEACGCILVVILFLPFLKGMFEKGKYGIP 691
Query: 163 RSTVCKAATITFIFVHLS 110
ST+ KAA + +FV S
Sbjct: 692 WSTLSKAAFLAVLFVVFS 709
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 449,186,948
Number of Sequences: 1393205
Number of extensions: 9875251
Number of successful extensions: 26082
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 25025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26017
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
