Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013797A_C01 KMC013797A_c01
(566 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201070.1| putative protein; protein id: At5g62640.1, supp... 108 4e-23
ref|NP_726441.1| CG4527-PB [Drosophila melanogaster] gi|21626741... 37 0.17
gb|EAA14903.1| agCP4725 [Anopheles gambiae str. PEST] 37 0.17
ref|XP_080680.1| CG4527 [Drosophila melanogaster] gi|24762616|re... 37 0.17
ref|NP_771804.1| bll5164 [Bradyrhizobium japonicum] gi|27353439|... 37 0.22
>ref|NP_201070.1| putative protein; protein id: At5g62640.1, supported by cDNA:
gi_13605674 [Arabidopsis thaliana]
gi|8809660|dbj|BAA97211.1|
gene_id:MRG21.6~pir||T34293~similar to unknown protein
[Arabidopsis thaliana]
gi|13605675|gb|AAK32831.1|AF361818_1 AT5g62640/MRG21_6
[Arabidopsis thaliana] gi|27363410|gb|AAO11624.1|
At5g62640/MRG21_6 [Arabidopsis thaliana]
Length = 520
Score = 108 bits (271), Expect = 4e-23
Identities = 60/103 (58%), Positives = 71/103 (68%), Gaps = 3/103 (2%)
Frame = -1
Query: 566 LRQLPPQKPSYVKSAASTVVKRPLAQHTPELTAMIPASVRVRREAAMINTKPKPSLPTTS 387
+R P KPS+VKSAA TVV+RPLAQHTPELT+M+PASVRVRRE+A + TKPKP S
Sbjct: 412 IRPYVPNKPSFVKSAAPTVVRRPLAQHTPELTSMVPASVRVRRESATV-TKPKPKTSIAS 470
Query: 386 R---TVSGKSGPTNVKPESVSSSSAPNAPSIDDSYSAFLEDMK 267
T + VK E +S+A SIDDSY+AFLEDMK
Sbjct: 471 SLSFTPRAMASAATVKVEPAKTSAASKPQSIDDSYTAFLEDMK 513
>ref|NP_726441.1| CG4527-PB [Drosophila melanogaster] gi|21626741|gb|AAF47198.2|
CG4527-PB [Drosophila melanogaster]
Length = 1703
Score = 37.0 bits (84), Expect = 0.17
Identities = 26/87 (29%), Positives = 41/87 (46%), Gaps = 3/87 (3%)
Frame = -1
Query: 554 PPQKP---SYVKSAASTVVKRPLAQHTPELTAMIPASVRVRREAAMINTKPKPSLPTTSR 384
PP P + K AAS P TPE T+ + ++ V + KP+P PT S
Sbjct: 479 PPPSPLGLANAKPAASDSQTSPKKLATPEPTSPVTTAIEVAIGQEAMEPKPQPPSPTASS 538
Query: 383 TVSGKSGPTNVKPESVSSSSAPNAPSI 303
VS +S ++ SVS++ ++ S+
Sbjct: 539 IVSVQSVASSSSSGSVSNAVLSSSTSL 565
>gb|EAA14903.1| agCP4725 [Anopheles gambiae str. PEST]
Length = 714
Score = 37.0 bits (84), Expect = 0.17
Identities = 22/69 (31%), Positives = 35/69 (49%)
Frame = -1
Query: 530 KSAASTVVKRPLAQHTPELTAMIPASVRVRREAAMINTKPKPSLPTTSRTVSGKSGPTNV 351
K ++T + +P+A TP A P+S + + + +T+PKPS T T G T
Sbjct: 347 KPTSATTLSKPIASDTPVKPAK-PSSTKPKPSTSATSTRPKPSTATKPST---SGGSTTK 402
Query: 350 KPESVSSSS 324
KP S+S+
Sbjct: 403 KPVRTSTST 411
>ref|XP_080680.1| CG4527 [Drosophila melanogaster] gi|24762616|ref|NP_611908.2|
CG4527-PA [Drosophila melanogaster]
gi|21626742|gb|AAM68311.1| CG4527-PA [Drosophila
melanogaster]
Length = 1300
Score = 37.0 bits (84), Expect = 0.17
Identities = 26/87 (29%), Positives = 41/87 (46%), Gaps = 3/87 (3%)
Frame = -1
Query: 554 PPQKP---SYVKSAASTVVKRPLAQHTPELTAMIPASVRVRREAAMINTKPKPSLPTTSR 384
PP P + K AAS P TPE T+ + ++ V + KP+P PT S
Sbjct: 479 PPPSPLGLANAKPAASDSQTSPKKLATPEPTSPVTTAIEVAIGQEAMEPKPQPPSPTASS 538
Query: 383 TVSGKSGPTNVKPESVSSSSAPNAPSI 303
VS +S ++ SVS++ ++ S+
Sbjct: 539 IVSVQSVASSSSSGSVSNAVLSSSTSL 565
>ref|NP_771804.1| bll5164 [Bradyrhizobium japonicum] gi|27353439|dbj|BAC50429.1|
bll5164 [Bradyrhizobium japonicum USDA 110]
Length = 328
Score = 36.6 bits (83), Expect = 0.22
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Frame = -1
Query: 566 LRQLPPQKPSYVKSAASTVVKRPLAQHTPELTAMIPA--SVRVRREAAMINTKPKPSLP- 396
L LPP P+ T + P A TP ++ M P + R+ A N P P P
Sbjct: 225 LAALPPSMPT----GKPTNAEFPSASSTPPVSIMNPEPPTAAARQAAPAANAAPAPRAPA 280
Query: 395 TTSRTVSGKSGPTNVKPESVSSSSAPNAPSI 303
TTS + + P KP + ++ AP A +
Sbjct: 281 TTSAQAAAPAAPAAKKPPAPKAARAPAAAPV 311
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 456,204,484
Number of Sequences: 1393205
Number of extensions: 9424165
Number of successful extensions: 29745
Number of sequences better than 10.0: 108
Number of HSP's better than 10.0 without gapping: 27577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29500
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
