KMC013796A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC013796A_C01 KMC013796A_c01
ttcatgaaatttATAGAAAATCAAAATCAAAACAAAACAAGTTTATCCTTGAATTTATAC
TTGTATAATACTATAAGGTCTTGGTGAAAATTGTGGCATTCCATCATGACTTTACCCTTA
CCCCTCTTCAAAAAAAAAAAAAAAAACGTACACAGGGTCTGAGGAGAAACTAAAATCTAG
ACTGGTAAACTCATCTTGGTCGACACTAGCCGCCAGTAAATATGTATGAACATGCCGGGT
TTGAAGCCTCTAACTACAATTCAACAACTTCACCTTCCCTGCATTCCCCCACATCAATCA
CCATAGTTCCTTTCTTCTTCGTCGGCTTCACCCTGCAACAATTTCTCCTCGGAGACTTGT
CCCACAAATTAGGGTTGGCTTCTTGTAAACCTCCACCACTTCAATCTGGGTCGGATCCTC
CATCCTCCA


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC013796A_C01 KMC013796A_c01
         (429 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAK97671.1| AT4g23490/F16G20_190 [Arabidopsis thaliana]             60  4e-11
ref|NP_567683.1| Expressed protein; protein id: At4g23490.1, sup...    60  4e-11
ref|NP_198961.1| putative protein; protein id: At5g41460.1 [Arab...    60  4e-11
ref|NP_192874.1| putative protein; protein id: At4g11350.1 [Arab...    59  2e-10
pir||D86146 F22L4.11 protein - Arabidopsis thaliana gi|8920593|g...    55  5e-10

>gb|AAK97671.1| AT4g23490/F16G20_190 [Arabidopsis thaliana]
          Length = 526

 Score = 59.7 bits (143), Expect(2) = 4e-11
 Identities = 24/43 (55%), Positives = 34/43 (78%)
 Frame = -3

Query: 385 QEANPNLWDKSPRRNCCRVKPTKKKGTMVIDVGECREGEVVEL 257
           ++ +P+LW++SPRRNCCRV  TK+  T+ I+VG CR GEV E+
Sbjct: 483 KKPDPHLWERSPRRNCCRVLQTKRNNTLWINVGVCRAGEVTEV 525

 Score = 27.7 bits (60), Expect(2) = 4e-11
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 429 WRMEDPTQIEVVEVYKKP 376
           W+M +P +I  + VYKKP
Sbjct: 468 WKMTNPAEINTIVVYKKP 485

>ref|NP_567683.1| Expressed protein; protein id: At4g23490.1, supported by cDNA:
           gi_15529152 [Arabidopsis thaliana]
           gi|25090374|gb|AAN72287.1| At4g23490/F16G20_190
           [Arabidopsis thaliana]
          Length = 526

 Score = 59.7 bits (143), Expect(2) = 4e-11
 Identities = 24/43 (55%), Positives = 34/43 (78%)
 Frame = -3

Query: 385 QEANPNLWDKSPRRNCCRVKPTKKKGTMVIDVGECREGEVVEL 257
           ++ +P+LW++SPRRNCCRV  TK+  T+ I+VG CR GEV E+
Sbjct: 483 KKPDPHLWERSPRRNCCRVLQTKRNNTLWINVGVCRAGEVTEV 525

 Score = 27.7 bits (60), Expect(2) = 4e-11
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 429 WRMEDPTQIEVVEVYKKP 376
           W+M +P +I  + VYKKP
Sbjct: 468 WKMTNPAEINTIVVYKKP 485

>ref|NP_198961.1| putative protein; protein id: At5g41460.1 [Arabidopsis thaliana]
           gi|9758054|dbj|BAB08517.1|
           gene_id:MYC6.16~pir||T13026~strong similarity to unknown
           protein [Arabidopsis thaliana]
          Length = 524

 Score = 59.7 bits (143), Expect(2) = 4e-11
 Identities = 26/43 (60%), Positives = 35/43 (80%)
 Frame = -3

Query: 385 QEANPNLWDKSPRRNCCRVKPTKKKGTMVIDVGECREGEVVEL 257
           ++ +P+LWD+SPRRNCCRVK +KK  T+ I V  C+EGEVVE+
Sbjct: 482 KKPDPHLWDRSPRRNCCRVK-SKKNNTLEISVAVCKEGEVVEV 523

 Score = 27.7 bits (60), Expect(2) = 4e-11
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 429 WRMEDPTQIEVVEVYKKP 376
           W+M +P+ I+ V VYKKP
Sbjct: 467 WKMANPSDIKTVIVYKKP 484

>ref|NP_192874.1| putative protein; protein id: At4g11350.1 [Arabidopsis thaliana]
           gi|7459603|pir||T13026 hypothetical protein F8L21.140 -
           Arabidopsis thaliana gi|5596481|emb|CAB51419.1| putative
           protein [Arabidopsis thaliana]
           gi|7267834|emb|CAB81236.1| putative protein [Arabidopsis
           thaliana]
          Length = 489

 Score = 59.3 bits (142), Expect(2) = 2e-10
 Identities = 24/43 (55%), Positives = 34/43 (78%)
 Frame = -3

Query: 385 QEANPNLWDKSPRRNCCRVKPTKKKGTMVIDVGECREGEVVEL 257
           ++ +P+LW++SPRRNCCRV  TK+  T+ I+VG CR GEV E+
Sbjct: 446 KKPDPHLWNRSPRRNCCRVLQTKRNNTLWINVGVCRAGEVTEV 488

 Score = 25.8 bits (55), Expect(2) = 2e-10
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 429 WRMEDPTQIEVVEVYKKP 376
           W M +P +I  + VYKKP
Sbjct: 431 WDMANPEEINTIVVYKKP 448

>pir||D86146 F22L4.11 protein - Arabidopsis thaliana
           gi|8920593|gb|AAF81315.1|AC061957_11 Contains similarity
           to a hypothetical protein F16G20.190 gi|7485555 from
           Arabidopsis thaliana BAC F16G20 gb|T05387
          Length = 509

 Score = 55.5 bits (132), Expect(2) = 5e-10
 Identities = 24/44 (54%), Positives = 33/44 (74%), Gaps = 2/44 (4%)
 Frame = -3

Query: 385 QEANPNLWDK--SPRRNCCRVKPTKKKGTMVIDVGECREGEVVE 260
           ++ +P+ W+K  +PRR+CCRV PT K GTMVIDVG C++ E  E
Sbjct: 462 KKPDPDRWNKHRAPRRDCCRVLPTTKNGTMVIDVGACKDDEFAE 505

 Score = 28.1 bits (61), Expect(2) = 5e-10
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 429 WRMEDPTQIEVVEVYKKP 376
           W M DP++ E V VYKKP
Sbjct: 447 WDMSDPSEFERVIVYKKP 464

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 389,914,374
Number of Sequences: 1393205
Number of extensions: 8352846
Number of successful extensions: 21141
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 20550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21128
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 6822985368
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 SPDL083h08_f BP057224 1 433
2 MPDL062f12_f AV779672 13 283




Lotus japonicus
Kazusa DNA Research Institute