KMC013796A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC013796A_C01 KMC013796A_c01
ttcatgaaatttATAGAAAATCAAAATCAAAACAAAACAAGTTTATCCTTGAATTTATAC
TTGTATAATACTATAAGGTCTTGGTGAAAATTGTGGCATTCCATCATGACTTTACCCTTA
CCCCTCTTCAAAAAAAAAAAAAAAAACGTACACAGGGTCTGAGGAGAAACTAAAATCTAG
ACTGGTAAACTCATCTTGGTCGACACTAGCCGCCAGTAAATATGTATGAACATGCCGGGT
TTGAAGCCTCTAACTACAATTCAACAACTTCACCTTCCCTGCATTCCCCCACATCAATCA
CCATAGTTCCTTTCTTCTTCGTCGGCTTCACCCTGCAACAATTTCTCCTCGGAGACTTGT
CCCACAAATTAGGGTTGGCTTCTTGTAAACCTCCACCACTTCAATCTGGGTCGGATCCTC
CATCCTCCA
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013796A_C01 KMC013796A_c01
(429 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK97671.1| AT4g23490/F16G20_190 [Arabidopsis thaliana] 60 4e-11
ref|NP_567683.1| Expressed protein; protein id: At4g23490.1, sup... 60 4e-11
ref|NP_198961.1| putative protein; protein id: At5g41460.1 [Arab... 60 4e-11
ref|NP_192874.1| putative protein; protein id: At4g11350.1 [Arab... 59 2e-10
pir||D86146 F22L4.11 protein - Arabidopsis thaliana gi|8920593|g... 55 5e-10
>gb|AAK97671.1| AT4g23490/F16G20_190 [Arabidopsis thaliana]
Length = 526
Score = 59.7 bits (143), Expect(2) = 4e-11
Identities = 24/43 (55%), Positives = 34/43 (78%)
Frame = -3
Query: 385 QEANPNLWDKSPRRNCCRVKPTKKKGTMVIDVGECREGEVVEL 257
++ +P+LW++SPRRNCCRV TK+ T+ I+VG CR GEV E+
Sbjct: 483 KKPDPHLWERSPRRNCCRVLQTKRNNTLWINVGVCRAGEVTEV 525
Score = 27.7 bits (60), Expect(2) = 4e-11
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 429 WRMEDPTQIEVVEVYKKP 376
W+M +P +I + VYKKP
Sbjct: 468 WKMTNPAEINTIVVYKKP 485
>ref|NP_567683.1| Expressed protein; protein id: At4g23490.1, supported by cDNA:
gi_15529152 [Arabidopsis thaliana]
gi|25090374|gb|AAN72287.1| At4g23490/F16G20_190
[Arabidopsis thaliana]
Length = 526
Score = 59.7 bits (143), Expect(2) = 4e-11
Identities = 24/43 (55%), Positives = 34/43 (78%)
Frame = -3
Query: 385 QEANPNLWDKSPRRNCCRVKPTKKKGTMVIDVGECREGEVVEL 257
++ +P+LW++SPRRNCCRV TK+ T+ I+VG CR GEV E+
Sbjct: 483 KKPDPHLWERSPRRNCCRVLQTKRNNTLWINVGVCRAGEVTEV 525
Score = 27.7 bits (60), Expect(2) = 4e-11
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 429 WRMEDPTQIEVVEVYKKP 376
W+M +P +I + VYKKP
Sbjct: 468 WKMTNPAEINTIVVYKKP 485
>ref|NP_198961.1| putative protein; protein id: At5g41460.1 [Arabidopsis thaliana]
gi|9758054|dbj|BAB08517.1|
gene_id:MYC6.16~pir||T13026~strong similarity to unknown
protein [Arabidopsis thaliana]
Length = 524
Score = 59.7 bits (143), Expect(2) = 4e-11
Identities = 26/43 (60%), Positives = 35/43 (80%)
Frame = -3
Query: 385 QEANPNLWDKSPRRNCCRVKPTKKKGTMVIDVGECREGEVVEL 257
++ +P+LWD+SPRRNCCRVK +KK T+ I V C+EGEVVE+
Sbjct: 482 KKPDPHLWDRSPRRNCCRVK-SKKNNTLEISVAVCKEGEVVEV 523
Score = 27.7 bits (60), Expect(2) = 4e-11
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -1
Query: 429 WRMEDPTQIEVVEVYKKP 376
W+M +P+ I+ V VYKKP
Sbjct: 467 WKMANPSDIKTVIVYKKP 484
>ref|NP_192874.1| putative protein; protein id: At4g11350.1 [Arabidopsis thaliana]
gi|7459603|pir||T13026 hypothetical protein F8L21.140 -
Arabidopsis thaliana gi|5596481|emb|CAB51419.1| putative
protein [Arabidopsis thaliana]
gi|7267834|emb|CAB81236.1| putative protein [Arabidopsis
thaliana]
Length = 489
Score = 59.3 bits (142), Expect(2) = 2e-10
Identities = 24/43 (55%), Positives = 34/43 (78%)
Frame = -3
Query: 385 QEANPNLWDKSPRRNCCRVKPTKKKGTMVIDVGECREGEVVEL 257
++ +P+LW++SPRRNCCRV TK+ T+ I+VG CR GEV E+
Sbjct: 446 KKPDPHLWNRSPRRNCCRVLQTKRNNTLWINVGVCRAGEVTEV 488
Score = 25.8 bits (55), Expect(2) = 2e-10
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 429 WRMEDPTQIEVVEVYKKP 376
W M +P +I + VYKKP
Sbjct: 431 WDMANPEEINTIVVYKKP 448
>pir||D86146 F22L4.11 protein - Arabidopsis thaliana
gi|8920593|gb|AAF81315.1|AC061957_11 Contains similarity
to a hypothetical protein F16G20.190 gi|7485555 from
Arabidopsis thaliana BAC F16G20 gb|T05387
Length = 509
Score = 55.5 bits (132), Expect(2) = 5e-10
Identities = 24/44 (54%), Positives = 33/44 (74%), Gaps = 2/44 (4%)
Frame = -3
Query: 385 QEANPNLWDK--SPRRNCCRVKPTKKKGTMVIDVGECREGEVVE 260
++ +P+ W+K +PRR+CCRV PT K GTMVIDVG C++ E E
Sbjct: 462 KKPDPDRWNKHRAPRRDCCRVLPTTKNGTMVIDVGACKDDEFAE 505
Score = 28.1 bits (61), Expect(2) = 5e-10
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -1
Query: 429 WRMEDPTQIEVVEVYKKP 376
W M DP++ E V VYKKP
Sbjct: 447 WDMSDPSEFERVIVYKKP 464
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 389,914,374
Number of Sequences: 1393205
Number of extensions: 8352846
Number of successful extensions: 21141
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 20550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21128
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 6822985368
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
SPDL083h08_f |
BP057224 |
1 |
433 |
2 |
MPDL062f12_f |
AV779672 |
13 |
283 |
|
Lotus japonicus
Kazusa DNA Research Institute