Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013781A_C01 KMC013781A_c01
(540 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197287.1| potassium-dependent sodium-calcium exchanger - ... 52 4e-06
ref|NP_197288.1| potassium-dependent sodium-calcium exchanger - ... 50 1e-05
gb|AAL58918.1|AF462830_1 AT5g17860/MVA3_210 [Arabidopsis thaliana] 50 1e-05
gb|AAN65432.1| Putative potassium-dependent sodium-calcium excha... 45 4e-04
ref|NP_566474.1| similar to potassium-dependent sodium-calcium e... 44 0.002
>ref|NP_197287.1| potassium-dependent sodium-calcium exchanger - like protein;
protein id: At5g17850.1 [Arabidopsis thaliana]
Length = 559
Score = 52.4 bits (124), Expect = 4e-06
Identities = 25/44 (56%), Positives = 33/44 (74%)
Frame = -3
Query: 538 LVAGLVWALVVLIRRDMKLDAVLGGGLLVVYFISLFLRLVQTLG 407
LVAGLVW+ +VL M+L V+G GLLV+Y SL LR++QT+G
Sbjct: 513 LVAGLVWSFLVLFSNRMRLGGVMGIGLLVIYLASLSLRIMQTVG 556
>ref|NP_197288.1| potassium-dependent sodium-calcium exchanger - like protein;
protein id: At5g17860.1, supported by cDNA: gi_18087574
[Arabidopsis thaliana] gi|10177887|dbj|BAB11219.1|
contains similarity to unknown
protein~gb|AAD25785.1~gene_id:MPI7.2 [Arabidopsis
thaliana] gi|22655386|gb|AAM98285.1| At5g17860/MVA3_210
[Arabidopsis thaliana]
Length = 570
Score = 50.4 bits (119), Expect = 1e-05
Identities = 22/46 (47%), Positives = 33/46 (70%)
Frame = -3
Query: 538 LVAGLVWALVVLIRRDMKLDAVLGGGLLVVYFISLFLRLVQTLGSL 401
L+ GL+WALV++ ++ M+LD ++GGGLL +Y L LRL + G L
Sbjct: 521 LMVGLLWALVIMPKKKMRLDKLVGGGLLAIYLCFLSLRLARVFGVL 566
>gb|AAL58918.1|AF462830_1 AT5g17860/MVA3_210 [Arabidopsis thaliana]
Length = 570
Score = 50.4 bits (119), Expect = 1e-05
Identities = 22/46 (47%), Positives = 33/46 (70%)
Frame = -3
Query: 538 LVAGLVWALVVLIRRDMKLDAVLGGGLLVVYFISLFLRLVQTLGSL 401
L+ GL+WALV++ ++ M+LD ++GGGLL +Y L LRL + G L
Sbjct: 521 LMVGLLWALVIMPKKKMRLDKLVGGGLLAIYLCFLSLRLARVFGVL 566
>gb|AAN65432.1| Putative potassium-dependent sodium-calcium exchanger-like protein
[Oryza sativa (japonica cultivar-group)]
gi|27436756|gb|AAO13475.1| Putative potassium-dependent
sodium-calcium exchanger-like protein [Oryza sativa
(japonica cultivar-group)]
Length = 639
Score = 45.4 bits (106), Expect = 4e-04
Identities = 21/46 (45%), Positives = 32/46 (68%)
Frame = -3
Query: 538 LVAGLVWALVVLIRRDMKLDAVLGGGLLVVYFISLFLRLVQTLGSL 401
LV GL+WALV+L R M+ + +LG GL+ +Y + LF+R+ +G L
Sbjct: 588 LVGGLIWALVMLPRGGMQPNKILGVGLIALYSVFLFIRVSNAMGIL 633
>ref|NP_566474.1| similar to potassium-dependent sodium-calcium exchanger - like
protein; protein id: At3g14070.1 [Arabidopsis thaliana]
gi|9294631|dbj|BAB02970.1| Na/Ca,K-exchanger-like
protein [Arabidopsis thaliana]
Length = 643
Score = 43.5 bits (101), Expect = 0.002
Identities = 21/44 (47%), Positives = 28/44 (62%)
Frame = -3
Query: 538 LVAGLVWALVVLIRRDMKLDAVLGGGLLVVYFISLFLRLVQTLG 407
LV GLVWA+V+L R DM+ LG GL+ +Y I + RL +G
Sbjct: 594 LVLGLVWAMVILPRNDMQPSRTLGVGLIAIYLIFVTFRLSCAMG 637
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 414,123,419
Number of Sequences: 1393205
Number of extensions: 7830536
Number of successful extensions: 16199
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 15826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16165
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
