Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013779A_C01 KMC013779A_c01
(595 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197933.1| AtBgamma - like protein; protein id: At5g25510.... 175 4e-43
emb|CAB76153.1| putative B' regulatory subunit of PP2A [Oryza sa... 142 3e-33
emb|CAC85920.1| protein phosphatase 2A B'kappa subunit [Oryza sa... 142 3e-33
ref|NP_187599.1| B' regulatory subunit of PP2A (AtB'beta); prote... 127 1e-28
dbj|BAB02360.1| protein phosphatase 2A B' regulatory subunit [Ar... 126 2e-28
>ref|NP_197933.1| AtBgamma - like protein; protein id: At5g25510.1, supported by
cDNA: gi_16604606 [Arabidopsis thaliana]
gi|16604607|gb|AAL24096.1| putative AtBgamma protein
[Arabidopsis thaliana] gi|23296589|gb|AAN13126.1|
putative AtBgamma protein [Arabidopsis thaliana]
Length = 500
Score = 175 bits (443), Expect = 4e-43
Identities = 83/120 (69%), Positives = 98/120 (81%)
Frame = -3
Query: 593 FQVAERALFLWNNDHIVNLIAHNRQVILPIIFPALDRNIQSHWNPAVVNLTHNIRKMFLE 414
FQV+ERALFLWNND IVNLI HNRQ ILPI+F AL++N Q+HWN +V+NLT N+RKMF E
Sbjct: 381 FQVSERALFLWNNDQIVNLIGHNRQAILPIMFTALEKNAQNHWNQSVLNLTLNVRKMFCE 440
Query: 413 MDEKLFISCHSNYKEEEVLLSSAAEKRKEAWKLLEHAASLKPVIGNTAVLVTPLMT*IAC 234
MDE LF+SCH+ +KE+E SAAEKRKE W LE+AAS+KP+ G TAVLVTP T IAC
Sbjct: 441 MDEALFMSCHARFKEDEAKQCSAAEKRKEVWARLENAASMKPITGKTAVLVTPRATSIAC 500
>emb|CAB76153.1| putative B' regulatory subunit of PP2A [Oryza sativa]
Length = 143
Score = 142 bits (358), Expect = 3e-33
Identities = 67/111 (60%), Positives = 87/111 (78%)
Frame = -3
Query: 593 FQVAERALFLWNNDHIVNLIAHNRQVILPIIFPALDRNIQSHWNPAVVNLTHNIRKMFLE 414
FQVAERALF+WNND++++LIA NRQ+I+PII PAL+ N Q+HWN AV+NLT N++KMF E
Sbjct: 20 FQVAERALFIWNNDNVISLIAQNRQMIMPIIVPALEHNSQNHWNQAVLNLTDNVKKMFSE 79
Query: 413 MDEKLFISCHSNYKEEEVLLSSAAEKRKEAWKLLEHAASLKPVIGNTAVLV 261
MD+ LF +C YKE+E +S KR+ W+ LE AAS +PV G+TAVLV
Sbjct: 80 MDDVLFSACLVKYKEDEERQASLESKRRLTWEKLESAASFQPVTGHTAVLV 130
>emb|CAC85920.1| protein phosphatase 2A B'kappa subunit [Oryza sativa (japonica
cultivar-group)]
Length = 510
Score = 142 bits (358), Expect = 3e-33
Identities = 67/111 (60%), Positives = 87/111 (78%)
Frame = -3
Query: 593 FQVAERALFLWNNDHIVNLIAHNRQVILPIIFPALDRNIQSHWNPAVVNLTHNIRKMFLE 414
FQVAERALF+WNND++++LIA NRQ+I+PII PAL+ N Q+HWN AV+NLT N++KMF E
Sbjct: 387 FQVAERALFIWNNDNVISLIAQNRQMIMPIIVPALEHNSQNHWNQAVLNLTDNVKKMFSE 446
Query: 413 MDEKLFISCHSNYKEEEVLLSSAAEKRKEAWKLLEHAASLKPVIGNTAVLV 261
MD+ LF +C YKE+E +S KR+ W+ LE AAS +PV G+TAVLV
Sbjct: 447 MDDVLFSACLVKYKEDEERQASLESKRRLTWEKLESAASFQPVTGHTAVLV 497
>ref|NP_187599.1| B' regulatory subunit of PP2A (AtB'beta); protein id: At3g09880.1,
supported by cDNA: gi_18176454, supported by cDNA:
gi_21280991, supported by cDNA: gi_2160691 [Arabidopsis
thaliana] gi|2160692|gb|AAB58901.1| B' regulatory
subunit of PP2A [Arabidopsis thaliana]
gi|6681331|gb|AAF23248.1|AC015985_6 B' regulatory
subunit of PP2A (AtB'beta) [Arabidopsis thaliana]
gi|18176455|gb|AAL60047.1| putative B' regulatory
subunit of PP2A AtB'beta [Arabidopsis thaliana]
gi|21280992|gb|AAM44900.1| putative B' regulatory
subunit of PP2A AtB'beta [Arabidopsis thaliana]
Length = 499
Score = 127 bits (319), Expect = 1e-28
Identities = 60/99 (60%), Positives = 73/99 (73%)
Frame = -3
Query: 593 FQVAERALFLWNNDHIVNLIAHNRQVILPIIFPALDRNIQSHWNPAVVNLTHNIRKMFLE 414
FQVAERALFLWNN+HIV LIA NR VILPII+P L++NIQSHWN AV LT NI+KMF+E
Sbjct: 386 FQVAERALFLWNNEHIVGLIAQNRSVILPIIYPTLEKNIQSHWNQAVHGLTTNIKKMFME 445
Query: 413 MDEKLFISCHSNYKEEEVLLSSAAEKRKEAWKLLEHAAS 297
MD +LF C Y+E++ E+R+ WK L AA+
Sbjct: 446 MDPELFEECQRQYEEKQAKSKEVEEQRQYTWKRLAEAAA 484
>dbj|BAB02360.1| protein phosphatase 2A B' regulatory subunit [Arabidopsis thaliana]
Length = 518
Score = 126 bits (317), Expect = 2e-28
Identities = 61/111 (54%), Positives = 79/111 (70%)
Frame = -3
Query: 593 FQVAERALFLWNNDHIVNLIAHNRQVILPIIFPALDRNIQSHWNPAVVNLTHNIRKMFLE 414
FQVAERALFLWNNDHI NLI N +VI+PI+FPAL+RN + HWN AV +LT N+RK+ E
Sbjct: 389 FQVAERALFLWNNDHIRNLITQNHKVIMPIVFPALERNTRGHWNQAVQSLTINVRKVLCE 448
Query: 413 MDEKLFISCHSNYKEEEVLLSSAAEKRKEAWKLLEHAASLKPVIGNTAVLV 261
+D+ LF C + ++ EEV + KR+ W+ LE A+ K V+ N AVLV
Sbjct: 449 IDQVLFDECLAKFQVEEVNKTEVKAKRERTWQRLEDLATSKTVVTNEAVLV 499
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 506,261,804
Number of Sequences: 1393205
Number of extensions: 10719210
Number of successful extensions: 32007
Number of sequences better than 10.0: 103
Number of HSP's better than 10.0 without gapping: 31104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32004
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
