Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013732A_C01 KMC013732A_c01
(556 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_587978.1| alpha-glucan synthase [Schizosaccharomyces pomb... 33 2.3
gb|EAA37552.1| GLP_2_18046_20028 [Giardia lamblia ATCC 50803] 31 8.9
>ref|NP_587978.1| alpha-glucan synthase [Schizosaccharomyces pombe]
gi|11386958|sp|Q9Y704|MOKE_SCHPO Cell wall
alpha-1,3-glucan synthase mok14 gi|11359002|pir||T43433
alpha-glucan synthase (EC 2.4.1.-) mok14 - fission yeast
(Schizosaccharomyces pombe) gi|4539597|emb|CAB40008.1|
alpha-glucan synthase [Schizosaccharomyces pombe]
gi|4586979|dbj|BAA76560.1| Mok14~Mok14 is homologous to
Mok1 which is an alpha-glucan synthase
[Schizosaccharomyces pombe]
Length = 1369
Score = 33.1 bits (74), Expect = 2.3
Identities = 23/78 (29%), Positives = 36/78 (45%), Gaps = 10/78 (12%)
Frame = -3
Query: 398 LIVSY*IDHLTYYHA----ILVVFFGMLDWWSLYWSLL*MVSVLLWDGPRS-----VLWM 246
LI+ Y + L+ H +L + FG + W ++W + L W G LW+
Sbjct: 1206 LIIFYVLRKLSNKHTWMVPVLGLGFGAIKWMHVFWGTSNVGIFLPWAGIAGPYLSRALWL 1265
Query: 245 WLG-LRSVWSPGIGIIFM 195
WLG L S+ G G+I +
Sbjct: 1266 WLGILDSIQGIGNGLILL 1283
>gb|EAA37552.1| GLP_2_18046_20028 [Giardia lamblia ATCC 50803]
Length = 660
Score = 31.2 bits (69), Expect = 8.9
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = +1
Query: 196 IKIMPIPGDQTDLSPSHIQRTLLGPSHSKTDTIHSSDQYRLHQSNMPKKTTSMA 357
++ M I T+LSP+ ++ + G SH T + S DQ RL +P+K S+A
Sbjct: 31 VQDMGIIASITELSPA-LRESYYGDSHELTCLVRSEDQGRLVYHLIPEKDISLA 83
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 497,090,163
Number of Sequences: 1393205
Number of extensions: 10585721
Number of successful extensions: 26918
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26910
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
